STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY28096.1Protein, SNF2 family; KEGG: bao:BAMF_3093 1.9e-118 SWI/SNF chromatin-remodeling complex subunit SNF22 SWI/SNF complex subunit SNF22; ATP-dependent helicase SNF22; Psort location: Cytoplasmic, score: 7.50. (394 aa)    
Predicted Functional Partners:
EKY28097.1
VRR-NUC domain protein; KEGG: bra:BRADO4398 0.0028 DNA-directed DNA polymerase; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 7.50.
 
     0.959
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.915
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 0.912
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.911
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.906
EKY28100.1
KEGG: ccb:Clocel_0761 7.0e-279 DNA-directed DNA polymerase; K02334 DNA polymerase bacteriophage-type; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.893
EKY28098.1
Virulence-associated protein E; Psort location: Cytoplasmic, score: 7.50.
 
     0.883
EKY28101.1
Hypothetical protein.
 
     0.878
EKY28102.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.878
EKY28103.1
Hypothetical protein; KEGG: edi:EDI_076680 0.00086 rnf5 K10666; Psort location: Cytoplasmic, score: 7.50.
 
    0.859
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.