STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY28097.1VRR-NUC domain protein; KEGG: bra:BRADO4398 0.0028 DNA-directed DNA polymerase; K02342 DNA polymerase III subunit epsilon; Psort location: Cytoplasmic, score: 7.50. (98 aa)    
Predicted Functional Partners:
EKY28096.1
Protein, SNF2 family; KEGG: bao:BAMF_3093 1.9e-118 SWI/SNF chromatin-remodeling complex subunit SNF22 SWI/SNF complex subunit SNF22; ATP-dependent helicase SNF22; Psort location: Cytoplasmic, score: 7.50.
 
     0.959
EKY28098.1
Virulence-associated protein E; Psort location: Cytoplasmic, score: 7.50.
 
     0.893
EKY28100.1
KEGG: ccb:Clocel_0761 7.0e-279 DNA-directed DNA polymerase; K02334 DNA polymerase bacteriophage-type; Psort location: Cytoplasmic, score: 7.50.
 
     0.888
EKY28101.1
Hypothetical protein.
 
     0.886
EKY28102.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.885
EKY28103.1
Hypothetical protein; KEGG: edi:EDI_076680 0.00086 rnf5 K10666; Psort location: Cytoplasmic, score: 7.50.
 
     0.879
EKY28093.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.864
EKY28089.1
DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.831
EKY28085.1
Putative phage terminase, large subunit.
 
     0.794
EKY28082.1
Phage portal protein, HK97 family.
 
     0.793
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.