Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKY28107.1Putative toxin-antitoxin system, toxin component; Psort location: Cytoplasmic, score: 7.50. (256 aa)    
Predicted Functional Partners:
EKY28108.1
DNA-binding helix-turn-helix protein; KEGG: apb:SAR116_1631 0.0014 transcriptional regulator, XRE family; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.943
EKY28089.1
DNA (cytosine-5-)-methyltransferase; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.729
EKY28105.1
HTH domain protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.680
EKY28091.1
HNH endonuclease domain protein.
 
     0.658
EKY28103.1
Hypothetical protein; KEGG: edi:EDI_076680 0.00086 rnf5 K10666; Psort location: Cytoplasmic, score: 7.50.
 
     0.640
EKY28075.1
Phage major tail protein, phi13 family.
 
     0.635
EKY28086.1
Phage terminase, small subunit, P27 family.
 
     0.635
EKY28090.1
Hypothetical protein.
 
     0.634
EKY28085.1
Putative phage terminase, large subunit.
 
     0.622
EKY28088.1
Hypothetical protein.
 
     0.622
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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