Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EKY27936.1Putative ribonuclease M5; KEGG: cbe:Cbei_0058 1.1e-51 primase/topoisomerase like protein; K05985 ribonuclease M5; Psort location: Cytoplasmic, score: 7.50. (143 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.825
EKY27937.1
3D domain protein; KEGG: lsp:Bsph_4760 6.4e-06 metalloprotease YebA precursor; Psort location: Cytoplasmic, score: 7.50.
     
 0.685
EKY27938.1
KEGG: cbe:Cbei_0056 2.6e-98 TatD family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.580
EKY27934.1
Hypothetical protein; KEGG: ddi:DDB_G0283391 2.7e-05 kinX; LISK family protein kinase; K05743 LIM domain kinase 1; Psort location: Cytoplasmic, score: 7.50.
 
     0.547
EKY29411.1
3D domain protein; KEGG: pfd:PFDG_00107 0.00034 hypothetical protein similar to DNA repair protein rad54; K10875 DNA repair and recombination protein RAD54 and RAD54-like protein.
 
   
 0.519
EKY25393.1
3D domain protein; KEGG: bao:BAMF_3327 4.6e-06 cwlO; secreted cell wall DL-endopeptidase.
 
   
 0.515
ispE
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
  
 0.511
mrnC
RNase3 domain protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
   
 0.460
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
   
 0.459
EKY26969.1
S4 domain protein.
  
   
 0.449
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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