Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKY27938.1KEGG: cbe:Cbei_0056 2.6e-98 TatD family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97. (261 aa)    
Predicted Functional Partners:
EKY25457.1
Hypothetical protein; KEGG: tye:THEYE_A1260 3.8e-23 deoxyribonuclease, TatD family; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 7.50.
      0.916
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 0.894
EKY27937.1
3D domain protein; KEGG: lsp:Bsph_4760 6.4e-06 metalloprotease YebA precursor; Psort location: Cytoplasmic, score: 7.50.
     
 0.631
EKY27936.1
Putative ribonuclease M5; KEGG: cbe:Cbei_0058 1.1e-51 primase/topoisomerase like protein; K05985 ribonuclease M5; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.580
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.557
EKY27939.1
methionine--tRNA ligase; KEGG: ccb:Clocel_3257 1.0e-151 methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.554
tsaD
Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
  
   
 0.438
EKY28433.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
   0.418
EKY22052.1
KEGG: sjj:SPJ_0724 2.4e-31 methionine import ATP-binding protein MetN K02003; Psort location: CytoplasmicMembrane, score: 9.96.
 
 
   0.416
EKY26329.1
MOSC domain protein; KEGG: hip:CGSHiEE_01660 6.2e-05 uridine phosphorylase; Psort location: Cytoplasmic, score: 7.50.
  
    0.411
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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