STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY27938.1KEGG: cbe:Cbei_0056 2.6e-98 TatD family hydrolase; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 9.97. (261 aa)    
Predicted Functional Partners:
EKY25457.1
Hypothetical protein; KEGG: tye:THEYE_A1260 3.8e-23 deoxyribonuclease, TatD family; K03424 TatD DNase family protein; Psort location: Cytoplasmic, score: 7.50.
      0.917
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   0.892
EKY27937.1
3D domain protein; KEGG: lsp:Bsph_4760 6.4e-06 metalloprotease YebA precursor; Psort location: Cytoplasmic, score: 7.50.
     
 0.641
EKY27936.1
Putative ribonuclease M5; KEGG: cbe:Cbei_0058 1.1e-51 primase/topoisomerase like protein; K05985 ribonuclease M5; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.603
EKY27939.1
methionine--tRNA ligase; KEGG: ccb:Clocel_3257 1.0e-151 methionyl-tRNA synthetase; K01874 methionyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
   0.576
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.532
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
 
 
   0.443
EKY22052.1
KEGG: sjj:SPJ_0724 2.4e-31 methionine import ATP-binding protein MetN K02003; Psort location: CytoplasmicMembrane, score: 9.96.
 
 
   0.434
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.423
EKY23559.1
KEGG: llk:LLKF_0891 7.7e-51 yijD; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.51.
 
 
   0.416
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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