Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EKY27814.1 | EKY27816.1 | HMPREF0216_01171 | HMPREF0216_01173 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | 0.994 |
| EKY27814.1 | rplF | HMPREF0216_01171 | HMPREF0216_01166 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.985 |
| EKY27814.1 | rplO | HMPREF0216_01171 | HMPREF0216_01170 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.989 |
| EKY27814.1 | rplP | HMPREF0216_01171 | HMPREF0216_01158 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.982 |
| EKY27814.1 | rplR | HMPREF0216_01171 | HMPREF0216_01167 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.991 |
| EKY27814.1 | rpmD | HMPREF0216_01171 | HMPREF0216_01169 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | Ribosomal protein L30; KEGG: apb:SAR116_2409 1.6e-09 ribosomal protein L30 K02907; Psort location: Cytoplasmic, score: 9.67. | 0.982 |
| EKY27814.1 | rpsE | HMPREF0216_01171 | HMPREF0216_01168 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.994 |
| EKY27814.1 | rpsH | HMPREF0216_01171 | HMPREF0216_01165 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.987 |
| EKY27814.1 | secA | HMPREF0216_01171 | HMPREF0216_03348 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.979 |
| EKY27814.1 | secE | HMPREF0216_01171 | HMPREF0216_01475 | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.978 |
| EKY27816.1 | EKY27814.1 | HMPREF0216_01173 | HMPREF0216_01171 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. Belongs to t [...] | 0.994 |
| EKY27816.1 | rplF | HMPREF0216_01173 | HMPREF0216_01166 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.982 |
| EKY27816.1 | rplO | HMPREF0216_01173 | HMPREF0216_01170 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.986 |
| EKY27816.1 | rplP | HMPREF0216_01173 | HMPREF0216_01158 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.976 |
| EKY27816.1 | rplR | HMPREF0216_01173 | HMPREF0216_01167 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.989 |
| EKY27816.1 | rpmD | HMPREF0216_01173 | HMPREF0216_01169 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Ribosomal protein L30; KEGG: apb:SAR116_2409 1.6e-09 ribosomal protein L30 K02907; Psort location: Cytoplasmic, score: 9.67. | 0.979 |
| EKY27816.1 | rpsE | HMPREF0216_01173 | HMPREF0216_01168 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.991 |
| EKY27816.1 | rpsH | HMPREF0216_01173 | HMPREF0216_01165 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.982 |
| EKY27816.1 | secA | HMPREF0216_01173 | HMPREF0216_03348 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.985 |
| EKY27816.1 | secE | HMPREF0216_01173 | HMPREF0216_01475 | KEGG: apb:SAR116_2411 2.1e-14 preprotein translocase, SecY subunit K03076; Psort location: CytoplasmicMembrane, score: 9.99; Belongs to the SecY/SEC61-alpha family. | Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.978 |
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