Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EKY27818.1 | guaA | HMPREF0216_01175 | HMPREF0216_03257 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP. | 0.964 |
| EKY27818.1 | rplD | HMPREF0216_01175 | HMPREF0216_01152 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.960 |
| EKY27818.1 | rplF | HMPREF0216_01175 | HMPREF0216_01166 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.969 |
| EKY27818.1 | rplN | HMPREF0216_01175 | HMPREF0216_01161 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.959 |
| EKY27818.1 | rplO | HMPREF0216_01175 | HMPREF0216_01170 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.971 |
| EKY27818.1 | rplP | HMPREF0216_01175 | HMPREF0216_01158 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.956 |
| EKY27818.1 | rplR | HMPREF0216_01175 | HMPREF0216_01167 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.976 |
| EKY27818.1 | rplX | HMPREF0216_01175 | HMPREF0216_01162 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.958 |
| EKY27818.1 | rpmD | HMPREF0216_01175 | HMPREF0216_01169 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | Ribosomal protein L30; KEGG: apb:SAR116_2409 1.6e-09 ribosomal protein L30 K02907; Psort location: Cytoplasmic, score: 9.67. | 0.977 |
| EKY27818.1 | rpsE | HMPREF0216_01175 | HMPREF0216_01168 | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.977 |
| guaA | EKY27818.1 | HMPREF0216_03257 | HMPREF0216_01175 | GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP. | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | 0.964 |
| guaA | rplD | HMPREF0216_03257 | HMPREF0216_01152 | GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.505 |
| guaA | rplN | HMPREF0216_03257 | HMPREF0216_01161 | GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.670 |
| guaA | rplP | HMPREF0216_03257 | HMPREF0216_01158 | GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.728 |
| guaA | rplR | HMPREF0216_03257 | HMPREF0216_01167 | GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.749 |
| guaA | rpmD | HMPREF0216_03257 | HMPREF0216_01169 | GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein L30; KEGG: apb:SAR116_2409 1.6e-09 ribosomal protein L30 K02907; Psort location: Cytoplasmic, score: 9.67. | 0.600 |
| guaA | rpsE | HMPREF0216_03257 | HMPREF0216_01168 | GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.729 |
| rplD | EKY27818.1 | HMPREF0216_01152 | HMPREF0216_01175 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). | 0.960 |
| rplD | guaA | HMPREF0216_01152 | HMPREF0216_03257 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP. | 0.505 |
| rplD | rplF | HMPREF0216_01152 | HMPREF0216_01166 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
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