EKY27662.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EKY27662.1

KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50. (65 aa)

Predicted Functional Partners:

atpF

0.998

atpB

0.997

atpE

0.997

atpA

0.997

atpG

0.996

atpD

0.996

atpC

0.995

EKY26099.1

0.937

rpoA

0.831

rplB

0.829

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY26099.1	EKY27662.1	HMPREF0216_02138	HMPREF0216_01305	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	0.937
EKY26099.1	atpA	HMPREF0216_02138	HMPREF0216_01307	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.983
EKY26099.1	atpB	HMPREF0216_02138	HMPREF0216_01302	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	0.984
EKY26099.1	atpC	HMPREF0216_02138	HMPREF0216_01310	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.983
EKY26099.1	atpD	HMPREF0216_02138	HMPREF0216_01309	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.983
EKY26099.1	atpE	HMPREF0216_02138	HMPREF0216_01303	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.516
EKY26099.1	atpF	HMPREF0216_02138	HMPREF0216_01304	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.	0.982
EKY26099.1	atpG	HMPREF0216_02138	HMPREF0216_01308	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.982
EKY26099.1	rplB	HMPREF0216_02138	HMPREF0216_01154	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.557
EKY26099.1	rpoA	HMPREF0216_02138	HMPREF0216_01183	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.545
EKY27662.1	EKY26099.1	HMPREF0216_01305	HMPREF0216_02138	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	KEGG: cpr:CPR_1613 6.6e-61 V-type ATP synthase subunit K K02124; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase proteolipid subunit family.	0.937
EKY27662.1	atpA	HMPREF0216_01305	HMPREF0216_01307	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.997
EKY27662.1	atpB	HMPREF0216_01305	HMPREF0216_01302	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.	0.997
EKY27662.1	atpC	HMPREF0216_01305	HMPREF0216_01310	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.995
EKY27662.1	atpD	HMPREF0216_01305	HMPREF0216_01309	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.996
EKY27662.1	atpE	HMPREF0216_01305	HMPREF0216_01303	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	ATP synthase F0, C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.997
EKY27662.1	atpF	HMPREF0216_01305	HMPREF0216_01304	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	ATP synthase F0, B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.	0.998
EKY27662.1	atpG	HMPREF0216_01305	HMPREF0216_01308	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.996
EKY27662.1	rplB	HMPREF0216_01305	HMPREF0216_01154	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.829
EKY27662.1	rpoA	HMPREF0216_01305	HMPREF0216_01183	KEGG: cbk:CLL_A0495 2.2e-23 atpH; F0F1 ATP synthase subunit delta K02113; Psort location: Cytoplasmic, score: 7.50.	DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.831