Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EKY27422.1Hypothetical protein; KEGG: tva:TVAG_332600 1.6e-09 hypothetical protein; K10866 DNA repair protein RAD50. (924 aa)    
Predicted Functional Partners:
EKY27421.1
Von Willebrand factor type A domain protein; KEGG: edi:EDI_048910 2.0e-08 intracellular protein transport protein USO1.
 
     0.584
EKY27423.1
Hypothetical protein; KEGG: zin:ZICARI_189 5.5e-09 glyS; putative glycyl-tRNA synthetase subunit beta; K01879 glycyl-tRNA synthetase beta chain.
       0.513
EKY27424.1
Hypothetical protein; KEGG: nam:NAMH_0030 0.0032 putative V-type ATP synthase subunit I K02123; Psort location: CytoplasmicMembrane, score: 10.00.
       0.513
EKY27425.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.513
EKY29412.1
Hypothetical protein; KEGG: sso:SSO9221 0.0037 rpoM-2; DNA-directed RNA polymerase, subunit M (RpoM-2) K03057; Psort location: CytoplasmicMembrane, score: 9.55.
  
  
 0.479
EKY29413.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.
  
  
 0.475
EKY28931.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.36.
  
  
 0.475
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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