EKY27372.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EKY27372.1

Polysaccharide deacetylase. (228 aa)

Predicted Functional Partners:

EKY28362.1

0.792

EKY23482.1

0.555

EKY29063.1

0.496

EKY28364.1

0.496

EKY24637.1

0.428

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY23482.1	EKY24637.1	HMPREF0216_02918	HMPREF0216_02667	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Sporulation protein PdaB, polysaccharide deacetylase family; KEGG: ctc:CTC02298 2.4e-63 chitooligosaccharide deacetylase K01463; Psort location: Extracellular, score: 9.60.	0.555
EKY23482.1	EKY27372.1	HMPREF0216_02918	HMPREF0216_01405	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Polysaccharide deacetylase.	0.555
EKY23482.1	EKY28362.1	HMPREF0216_02918	HMPREF0216_00884	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	KEGG: bmq:BMQ_0937 9.1e-80 glycosyl transferase domain protein, group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.923
EKY23482.1	EKY28364.1	HMPREF0216_02918	HMPREF0216_00886	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein.	0.923
EKY23482.1	EKY29063.1	HMPREF0216_02918	HMPREF0216_00422	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	KEGG: saf:SULAZ_0172 1.9e-24 glycosyl transferase, group 2 family; Psort location: CytoplasmicMembrane, score: 8.16.	0.923
EKY24637.1	EKY23482.1	HMPREF0216_02667	HMPREF0216_02918	Sporulation protein PdaB, polysaccharide deacetylase family; KEGG: ctc:CTC02298 2.4e-63 chitooligosaccharide deacetylase K01463; Psort location: Extracellular, score: 9.60.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.555
EKY24637.1	EKY27372.1	HMPREF0216_02667	HMPREF0216_01405	Sporulation protein PdaB, polysaccharide deacetylase family; KEGG: ctc:CTC02298 2.4e-63 chitooligosaccharide deacetylase K01463; Psort location: Extracellular, score: 9.60.	Polysaccharide deacetylase.	0.428
EKY24637.1	EKY28362.1	HMPREF0216_02667	HMPREF0216_00884	Sporulation protein PdaB, polysaccharide deacetylase family; KEGG: ctc:CTC02298 2.4e-63 chitooligosaccharide deacetylase K01463; Psort location: Extracellular, score: 9.60.	KEGG: bmq:BMQ_0937 9.1e-80 glycosyl transferase domain protein, group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.659
EKY24637.1	EKY28364.1	HMPREF0216_02667	HMPREF0216_00886	Sporulation protein PdaB, polysaccharide deacetylase family; KEGG: ctc:CTC02298 2.4e-63 chitooligosaccharide deacetylase K01463; Psort location: Extracellular, score: 9.60.	Hypothetical protein.	0.496
EKY24637.1	EKY29063.1	HMPREF0216_02667	HMPREF0216_00422	Sporulation protein PdaB, polysaccharide deacetylase family; KEGG: ctc:CTC02298 2.4e-63 chitooligosaccharide deacetylase K01463; Psort location: Extracellular, score: 9.60.	KEGG: saf:SULAZ_0172 1.9e-24 glycosyl transferase, group 2 family; Psort location: CytoplasmicMembrane, score: 8.16.	0.496
EKY27372.1	EKY23482.1	HMPREF0216_01405	HMPREF0216_02918	Polysaccharide deacetylase.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.555
EKY27372.1	EKY24637.1	HMPREF0216_01405	HMPREF0216_02667	Polysaccharide deacetylase.	Sporulation protein PdaB, polysaccharide deacetylase family; KEGG: ctc:CTC02298 2.4e-63 chitooligosaccharide deacetylase K01463; Psort location: Extracellular, score: 9.60.	0.428
EKY27372.1	EKY28362.1	HMPREF0216_01405	HMPREF0216_00884	Polysaccharide deacetylase.	KEGG: bmq:BMQ_0937 9.1e-80 glycosyl transferase domain protein, group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.792
EKY27372.1	EKY28364.1	HMPREF0216_01405	HMPREF0216_00886	Polysaccharide deacetylase.	Hypothetical protein.	0.496
EKY27372.1	EKY29063.1	HMPREF0216_01405	HMPREF0216_00422	Polysaccharide deacetylase.	KEGG: saf:SULAZ_0172 1.9e-24 glycosyl transferase, group 2 family; Psort location: CytoplasmicMembrane, score: 8.16.	0.496
EKY28362.1	EKY23482.1	HMPREF0216_00884	HMPREF0216_02918	KEGG: bmq:BMQ_0937 9.1e-80 glycosyl transferase domain protein, group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.923
EKY28362.1	EKY24637.1	HMPREF0216_00884	HMPREF0216_02667	KEGG: bmq:BMQ_0937 9.1e-80 glycosyl transferase domain protein, group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	Sporulation protein PdaB, polysaccharide deacetylase family; KEGG: ctc:CTC02298 2.4e-63 chitooligosaccharide deacetylase K01463; Psort location: Extracellular, score: 9.60.	0.659
EKY28362.1	EKY27372.1	HMPREF0216_00884	HMPREF0216_01405	KEGG: bmq:BMQ_0937 9.1e-80 glycosyl transferase domain protein, group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	Polysaccharide deacetylase.	0.792
EKY28362.1	EKY28364.1	HMPREF0216_00884	HMPREF0216_00886	KEGG: bmq:BMQ_0937 9.1e-80 glycosyl transferase domain protein, group 2 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein.	0.907
EKY28364.1	EKY23482.1	HMPREF0216_00886	HMPREF0216_02918	Hypothetical protein.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.923