Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY27152.1KEGG: cbk:CLL_A1283 8.8e-82 clpP; Clp protease. (254 aa)    
Predicted Functional Partners:
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
 0.941
EKY26992.1
Stage III sporulation protein AD; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.771
EKY26988.1
Stage III sporulation protein AA; KEGG: rso:RSc1335 0.0072 clpB; ATP-dependent protease K03695; Psort location: Cytoplasmic, score: 7.50.
  
     0.766
EKY25257.1
KEGG: cbe:Cbei_0097 2.2e-181 sporulation stage II, protein E K06382; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.765
EKY27008.1
SpoIVB peptidase; KEGG: cbk:CLL_A2396 2.2e-124 spoIVB; stage IV sporulation protein B K06399.
  
     0.763
EKY27642.1
Stage II sporulation protein R; Psort location: Cytoplasmic, score: 7.50.
  
     0.762
EKY27672.1
Sporulation transcriptional regulator SpoIIID; Psort location: Cytoplasmic, score: 7.50.
  
     0.759
EKY22730.1
Sporulation protein YqfD; Psort location: Cytoplasmic, score: 7.50.
  
     0.755
EKY26993.1
Stage III sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.752
EKY22769.1
KEGG: bao:BAMF_1841 2.1e-71 spoVAD1; stage V sporulation protein AD.
  
     0.748
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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