STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY27041.1CobW/P47K family protein; KEGG: reh:H16_A3373 1.9e-22 G3E family GTPase; Psort location: Cytoplasmic, score: 7.50. (331 aa)    
Predicted Functional Partners:
EKY27042.1
Hypothetical protein; KEGG: mfe:Mefer_1539 3.4e-05 L-seryl-tRNA(sec) kinase; K10837 O-phosphoseryl-tRNA(Sec) kinase; Psort location: Cytoplasmic, score: 7.50.
 
    
0.847
EKY27043.1
Putative permease; Psort location: CytoplasmicMembrane, score: 10.00.
    0.841
EKY27044.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.719
EKY27045.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.670
rpsZ
Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.605
EKY28756.1
ABC transporter, substrate-binding protein; KEGG: apb:SAR116_2227 4.2e-27 periplasmic solute binding protein K09815; Psort location: CytoplasmicMembrane, score: 9.68.
  
  
 0.592
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
  
 
   0.583
EKY27818.1
Putative methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
    
   0.522
EKY27819.1
Hypothetical protein; KEGG: cpe:CPE2383 4.3e-18 map; methionine aminopeptidase, type I; K01265 methionyl aminopeptidase; Psort location: CytoplasmicMembrane, score: 9.55.
    
   0.522
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.469
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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