Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY26623.1DAK2 domain fusion protein YloV. (544 aa)    
Predicted Functional Partners:
EKY26624.1
Hypothetical protein.
 
  
 0.993
EKY27928.1
EDD domain protein, DegV family; KEGG: mga:MGA_1184 2.3e-26 DegV-like protein; Psort location: Cytoplasmic, score: 7.50.
 
 0.988
EKY22494.1
EDD domain protein, DegV family; KEGG: mga:MGA_1184 3.4e-25 DegV-like protein; Psort location: Cytoplasmic, score: 7.50.
 
 0.981
EKY28163.1
EDD domain protein, DegV family.
 
 0.969
EKY28153.1
EDD domain protein, DegV family.
 
 0.959
EKY29324.1
EDD domain protein, DegV family; KEGG: mga:MGA_1184 1.4e-08 DegV-like protein.
 
 0.941
EKY25693.1
EDD domain protein, DegV family; KEGG: mga:MGA_1184 4.9e-17 DegV-like protein; Psort location: Cytoplasmic, score: 7.50.
 
 0.912
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
  
    0.672
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.596
EKY26997.1
Alkaline shock protein 23 domain protein; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.563
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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