EKY26681.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EKY26681.1

Putative mutacin ABC transporter, ATP-binding protein MutF. (241 aa)

Predicted Functional Partners:

EKY26682.1

0.974

ecfA

0.931

EKY27756.1

0.707

EKY28901.1

0.706

EKY25773.1

0.706

EKY29083.1

0.705

EKY26160.1

0.643

atpD

0.604

atpA

0.596

atpG

0.588

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY25773.1	EKY26681.1	HMPREF0216_02355	HMPREF0216_01866	ABC-2 type transporter.	Putative mutacin ABC transporter, ATP-binding protein MutF.	0.706
EKY26160.1	EKY26681.1	HMPREF0216_02199	HMPREF0216_01866	ABC transporter, ATP-binding protein.	Putative mutacin ABC transporter, ATP-binding protein MutF.	0.643
EKY26681.1	EKY25773.1	HMPREF0216_01866	HMPREF0216_02355	Putative mutacin ABC transporter, ATP-binding protein MutF.	ABC-2 type transporter.	0.706
EKY26681.1	EKY26160.1	HMPREF0216_01866	HMPREF0216_02199	Putative mutacin ABC transporter, ATP-binding protein MutF.	ABC transporter, ATP-binding protein.	0.643
EKY26681.1	EKY26682.1	HMPREF0216_01866	HMPREF0216_01867	Putative mutacin ABC transporter, ATP-binding protein MutF.	Hypothetical protein.	0.974
EKY26681.1	EKY27756.1	HMPREF0216_01866	HMPREF0216_01230	Putative mutacin ABC transporter, ATP-binding protein MutF.	ABC-2 type transporter; KEGG: bsb:Bresu_2062 0.0029 NADH dehydrogenase (quinone) K05561; Psort location: CytoplasmicMembrane, score: 10.00.	0.707
EKY26681.1	EKY28901.1	HMPREF0216_01866	HMPREF0216_00496	Putative mutacin ABC transporter, ATP-binding protein MutF.	ABC transporter, permease family protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.706
EKY26681.1	EKY29083.1	HMPREF0216_01866	HMPREF0216_00442	Putative mutacin ABC transporter, ATP-binding protein MutF.	Putative arginine ABC transporter, permease protein ArtQ.	0.705
EKY26681.1	atpA	HMPREF0216_01866	HMPREF0216_01307	Putative mutacin ABC transporter, ATP-binding protein MutF.	ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	0.596
EKY26681.1	atpD	HMPREF0216_01866	HMPREF0216_01309	Putative mutacin ABC transporter, ATP-binding protein MutF.	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.604
EKY26681.1	atpG	HMPREF0216_01866	HMPREF0216_01308	Putative mutacin ABC transporter, ATP-binding protein MutF.	ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.588
EKY26681.1	ecfA	HMPREF0216_01866	HMPREF0216_01185	Putative mutacin ABC transporter, ATP-binding protein MutF.	Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.931
EKY26682.1	EKY26681.1	HMPREF0216_01867	HMPREF0216_01866	Hypothetical protein.	Putative mutacin ABC transporter, ATP-binding protein MutF.	0.974
EKY27756.1	EKY26681.1	HMPREF0216_01230	HMPREF0216_01866	ABC-2 type transporter; KEGG: bsb:Bresu_2062 0.0029 NADH dehydrogenase (quinone) K05561; Psort location: CytoplasmicMembrane, score: 10.00.	Putative mutacin ABC transporter, ATP-binding protein MutF.	0.707
EKY28901.1	EKY26681.1	HMPREF0216_00496	HMPREF0216_01866	ABC transporter, permease family protein; Psort location: CytoplasmicMembrane, score: 10.00.	Putative mutacin ABC transporter, ATP-binding protein MutF.	0.706
EKY29083.1	EKY26681.1	HMPREF0216_00442	HMPREF0216_01866	Putative arginine ABC transporter, permease protein ArtQ.	Putative mutacin ABC transporter, ATP-binding protein MutF.	0.705
atpA	EKY26681.1	HMPREF0216_01307	HMPREF0216_01866	ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	Putative mutacin ABC transporter, ATP-binding protein MutF.	0.596
atpA	atpD	HMPREF0216_01307	HMPREF0216_01309	ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.999
atpA	atpG	HMPREF0216_01307	HMPREF0216_01308	ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.	ATP synthase F1, gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.	0.999
atpD	EKY26681.1	HMPREF0216_01309	HMPREF0216_01866	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	Putative mutacin ABC transporter, ATP-binding protein MutF.	0.604