Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY26433.1Hypothetical protein; KEGG: pfh:PFHG_01225 0.00091 hypothetical protein similar to DNA repair protein; K10866 DNA repair protein RAD50; Psort location: CytoplasmicMembrane, score: 10.00. (657 aa)    
Predicted Functional Partners:
EKY28343.1
Hypothetical protein.
  
    0.714
EKY28342.1
Hypothetical protein.
  
    0.707
EKY28344.1
Hypothetical protein.
  
    0.705
EKY25650.1
Hypothetical protein.
  
     0.617
EKY23872.1
Hypothetical protein; KEGG: edi:EDI_294890 0.00029 DNA mismatch repair protein MSH2.
  
     0.601
EKY27855.1
Fe-S iron-sulfur cluster assembly protein, NifU family; KEGG: rxy:Rxyl_1354 5.7e-21 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase K00566; Psort location: Cytoplasmic, score: 7.50.
   
    0.586
EKY22782.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
   
    0.586
EKY23483.1
KEGG: edi:EDI_025770 0.0061 protein serine/threonine kinase; Psort location: Extracellular, score: 8.91.
  
     0.585
EKY26370.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
   
 0.580
EKY23220.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
     0.551
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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