Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKY26377.1KEGG: vfi:VF_A1053 1.2e-05 MerR family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50. (309 aa)    
Predicted Functional Partners:
EKY28426.1
Class II glutamine amidotransferase.
     
 0.845
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.761
EKY27374.1
Diguanylate cyclase domain protein.
    
 0.719
EKY26376.1
Transcriptional regulator, effector binding domain protein; KEGG: bcz:BCZK3497 5.6e-13 adaA; AraC family transcriptional regulator K13530; Psort location: Cytoplasmic, score: 9.67.
 
  
 0.673
EKY26888.1
TipAS antibiotic-recognition domain protein; KEGG: eci:UTI89_C3737 7.0e-08 zntR; zinc-responsive transcriptional regulator K13638; Psort location: Cytoplasmic, score: 7.50.
  
     0.641
EKY23319.1
KEGG: ebr:ECB_01448 7.3e-25 yddV; predicted diguanylate cyclase; K13069 diguanylate cyclase; Psort location: CytoplasmicMembrane, score: 8.78.
    
 0.599
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.535
EKY25535.1
Putative multidrug-efflux transporter 2 regulator.
  
     0.512
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.473
EKY28927.1
KEGG: vfi:VF_A1053 2.4e-08 MerR family transcriptional regulator; Psort location: Cytoplasmic, score: 7.50.
  
     0.449
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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