Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY26281.1KEGG: cbt:CLH_2330 3.4e-57 peptidase, M50 family; Psort location: CytoplasmicMembrane, score: 10.00. (215 aa)    
Predicted Functional Partners:
EKY26282.1
Cell envelope-like function transcriptional attenuator common domain protein; KEGG: bwe:BcerKBAB4_2153 5.0e-12 1A family penicillin-binding protein; K05366 penicillin-binding protein 1A; Psort location: CytoplasmicMembrane, score: 9.51.
       0.474
EKY23482.1
Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.
       0.435
EKY24034.1
S1 RNA binding domain protein.
  
    0.423
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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