EKY26159.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EKY26159.1

NMT1/THI5-like protein. (347 aa)

Predicted Functional Partners:

EKY26161.1

0.949

EKY26160.1

0.946

EKY25756.1

0.889

EKY23250.1

0.743

EKY23251.1

0.702

EKY26499.1

0.650

EKY26500.1

0.632

gpr

0.598

EKY26158.1

0.597

EKY26157.1

0.596

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY23250.1	EKY23251.1	HMPREF0216_03035	HMPREF0216_03036	ABC transporter, permease protein; KEGG: apb:SAR116_1441 6.4e-23 probable taurine uptake ABC transporter permease protein K02050; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: bmd:BMD_4703 1.4e-37 ssuB; aliphatic sulfonates ABC transporter ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.	0.986
EKY23250.1	EKY25756.1	HMPREF0216_03035	HMPREF0216_02338	ABC transporter, permease protein; KEGG: apb:SAR116_1441 6.4e-23 probable taurine uptake ABC transporter permease protein K02050; Psort location: CytoplasmicMembrane, score: 10.00.	[2Fe-2S]-binding domain protein.	0.842
EKY23250.1	EKY26159.1	HMPREF0216_03035	HMPREF0216_02198	ABC transporter, permease protein; KEGG: apb:SAR116_1441 6.4e-23 probable taurine uptake ABC transporter permease protein K02050; Psort location: CytoplasmicMembrane, score: 10.00.	NMT1/THI5-like protein.	0.743
EKY23250.1	EKY26160.1	HMPREF0216_03035	HMPREF0216_02199	ABC transporter, permease protein; KEGG: apb:SAR116_1441 6.4e-23 probable taurine uptake ABC transporter permease protein K02050; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein.	0.844
EKY23250.1	EKY26499.1	HMPREF0216_03035	HMPREF0216_01913	ABC transporter, permease protein; KEGG: apb:SAR116_1441 6.4e-23 probable taurine uptake ABC transporter permease protein K02050; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: cbt:CLH_2305 4.3e-41 aliphatic sulfonates import ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.	0.929
EKY23251.1	EKY23250.1	HMPREF0216_03036	HMPREF0216_03035	ABC transporter, ATP-binding protein; KEGG: bmd:BMD_4703 1.4e-37 ssuB; aliphatic sulfonates ABC transporter ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.	ABC transporter, permease protein; KEGG: apb:SAR116_1441 6.4e-23 probable taurine uptake ABC transporter permease protein K02050; Psort location: CytoplasmicMembrane, score: 10.00.	0.986
EKY23251.1	EKY25756.1	HMPREF0216_03036	HMPREF0216_02338	ABC transporter, ATP-binding protein; KEGG: bmd:BMD_4703 1.4e-37 ssuB; aliphatic sulfonates ABC transporter ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.	[2Fe-2S]-binding domain protein.	0.855
EKY23251.1	EKY26159.1	HMPREF0216_03036	HMPREF0216_02198	ABC transporter, ATP-binding protein; KEGG: bmd:BMD_4703 1.4e-37 ssuB; aliphatic sulfonates ABC transporter ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.	NMT1/THI5-like protein.	0.702
EKY23251.1	EKY26161.1	HMPREF0216_03036	HMPREF0216_02200	ABC transporter, ATP-binding protein; KEGG: bmd:BMD_4703 1.4e-37 ssuB; aliphatic sulfonates ABC transporter ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.	ABC transporter, permease protein.	0.834
EKY23251.1	EKY26500.1	HMPREF0216_03036	HMPREF0216_01914	ABC transporter, ATP-binding protein; KEGG: bmd:BMD_4703 1.4e-37 ssuB; aliphatic sulfonates ABC transporter ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: apb:SAR116_2098 0.00052 nitrate ABC transporter, permease protein, putative K02050; Psort location: CytoplasmicMembrane, score: 10.00.	0.701
EKY25756.1	EKY23250.1	HMPREF0216_02338	HMPREF0216_03035	[2Fe-2S]-binding domain protein.	ABC transporter, permease protein; KEGG: apb:SAR116_1441 6.4e-23 probable taurine uptake ABC transporter permease protein K02050; Psort location: CytoplasmicMembrane, score: 10.00.	0.842
EKY25756.1	EKY23251.1	HMPREF0216_02338	HMPREF0216_03036	[2Fe-2S]-binding domain protein.	ABC transporter, ATP-binding protein; KEGG: bmd:BMD_4703 1.4e-37 ssuB; aliphatic sulfonates ABC transporter ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.	0.855
EKY25756.1	EKY26159.1	HMPREF0216_02338	HMPREF0216_02198	[2Fe-2S]-binding domain protein.	NMT1/THI5-like protein.	0.889
EKY25756.1	EKY26160.1	HMPREF0216_02338	HMPREF0216_02199	[2Fe-2S]-binding domain protein.	ABC transporter, ATP-binding protein.	0.855
EKY25756.1	EKY26161.1	HMPREF0216_02338	HMPREF0216_02200	[2Fe-2S]-binding domain protein.	ABC transporter, permease protein.	0.842
EKY25756.1	EKY26499.1	HMPREF0216_02338	HMPREF0216_01913	[2Fe-2S]-binding domain protein.	ABC transporter, ATP-binding protein; KEGG: cbt:CLH_2305 4.3e-41 aliphatic sulfonates import ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.	0.855
EKY25756.1	EKY26500.1	HMPREF0216_02338	HMPREF0216_01914	[2Fe-2S]-binding domain protein.	KEGG: apb:SAR116_2098 0.00052 nitrate ABC transporter, permease protein, putative K02050; Psort location: CytoplasmicMembrane, score: 10.00.	0.842
EKY26157.1	EKY26158.1	HMPREF0216_02196	HMPREF0216_02197	TIGR00659 family protein; KEGG: bao:BAMF_3670 5.1e-38 lrgB3; anti-holin factor controlling activity of murein hydrolases; Psort location: CytoplasmicMembrane, score: 10.00.	LrgA family protein; KEGG: btk:BT9727_5121 2.0e-13 murein hydrolase regulator LrgA K05338; Psort location: CytoplasmicMembrane, score: 10.00.	0.995
EKY26157.1	EKY26159.1	HMPREF0216_02196	HMPREF0216_02198	TIGR00659 family protein; KEGG: bao:BAMF_3670 5.1e-38 lrgB3; anti-holin factor controlling activity of murein hydrolases; Psort location: CytoplasmicMembrane, score: 10.00.	NMT1/THI5-like protein.	0.596
EKY26157.1	EKY26160.1	HMPREF0216_02196	HMPREF0216_02199	TIGR00659 family protein; KEGG: bao:BAMF_3670 5.1e-38 lrgB3; anti-holin factor controlling activity of murein hydrolases; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein.	0.492