STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY25819.1Exonuclease; KEGG: bce:BC3538 1.1e-14 exonuclease; Psort location: Cytoplasmic, score: 7.50. (248 aa)    
Predicted Functional Partners:
EKY25820.1
Hypothetical protein; KEGG: zin:ZICARI_194 0.0032 valS; putative valyl-tRNA synthetase; K01873 valyl-tRNA synthetase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.623
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 
  0.616
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
    
 
 0.545
EKY25818.1
Hypothetical protein.
       0.540
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
    
  0.524
glnS
glutamine--tRNA ligase; KEGG: ccb:Clocel_3324 1.3e-275 glutaminyl-tRNA synthetase; K01886 glutaminyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97.
  
  
  0.504
EKY28647.1
Hypothetical protein.
  
 
 0.497
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
  
   
 0.452
EKY25817.1
Hypothetical protein.
       0.407
EKY25384.1
KEGG: cdf:CD2503 7.0e-08 cation-transporting ATPase K01529.
  
     0.402
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.