Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKY25116.1Putative RNA polymerase sigma factor SigV; Belongs to the sigma-70 factor family. ECF subfamily. (164 aa)    
Predicted Functional Partners:
EKY25117.1
Hypothetical protein.
 
 
   0.850
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.625
EKY23487.1
Hypothetical protein; KEGG: zin:ZICARI_164 0.00048 sucB; putative 2-oxoglutarate dehydrogenase, E2 subunit; K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase).
  
 
 0.623
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.608
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.564
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
 
 0.547
EKY25109.1
PASTA domain protein.
 
 
 
 0.458
EKY25114.1
Hypothetical protein.
       0.432
EKY25115.1
Hypothetical protein.
       0.432
EKY26629.1
Putative serine/threonine-protein kinase PrkC.
  
 
 
 0.426
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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