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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY24638.1Single-strand binding family protein. (218 aa)    
Predicted Functional Partners:
EKY24636.1
Hypothetical protein.
 
     0.883
EKY26096.1
KEGG: cpe:CPE1645 1.7e-181 radical SAM domain protein; K04034 anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase; Psort location: Cytoplasmic, score: 7.50.
  
    0.876
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
 
 0.850
EKY27729.1
DNA polymerase III, alpha subunit; KEGG: cbe:Cbei_4853 0. dnaE; DNA polymerase III DnaE K02337; Psort location: Cytoplasmic, score: 9.97.
   
 0.834
EKY21952.1
KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.
  
 
 
 0.789
EKY27638.1
LysM domain protein; KEGG: fps:FP0019 0.00013 mltD; membrane-bound lytic murein transglycosylase D precursor K08307; Psort location: Cytoplasmic, score: 7.50.
  
     0.758
EKY23994.1
Hypothetical protein.
  
     0.745
EKY29626.1
KEGG: shn:Shewana3_3590 7.0e-20 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.67.
     
 0.734
EKY27774.1
KEGG: shn:Shewana3_3590 1.2e-11 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.97.
     
 0.734
EKY24074.1
KEGG: shn:Shewana3_3590 9.8e-19 single-strand binding protein K03111.
     
 0.734
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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