Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY24638.1Single-strand binding family protein. (218 aa)    
Predicted Functional Partners:
EKY24636.1
Hypothetical protein.
 
     0.880
EKY26096.1
KEGG: cpe:CPE1645 1.7e-181 radical SAM domain protein; K04034 anaerobic magnesium-protoporphyrin IX monomethyl ester cyclase; Psort location: Cytoplasmic, score: 7.50.
  
    0.839
EKY27729.1
DNA polymerase III, alpha subunit; KEGG: cbe:Cbei_4853 0. dnaE; DNA polymerase III DnaE K02337; Psort location: Cytoplasmic, score: 9.97.
   
 0.800
EKY27638.1
LysM domain protein; KEGG: fps:FP0019 0.00013 mltD; membrane-bound lytic murein transglycosylase D precursor K08307; Psort location: Cytoplasmic, score: 7.50.
  
     0.758
EKY23994.1
Hypothetical protein.
  
     0.745
EKY21952.1
KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.
  
 
 
 0.737
EKY26991.1
Stage III sporulation protein AC; Psort location: CytoplasmicMembrane, score: 9.55.
  
    0.720
priA
Primosomal protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily.
    
 
 0.706
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.659
EKY27871.1
DnaD domain protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.652
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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