EKY23985.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EKY23985.1

Oligopeptide ABC transporter, permease protein OppC. (318 aa)

Predicted Functional Partners:

EKY23986.1

0.999

EKY28598.1

0.997

EKY23987.1

0.996

EKY28597.1

0.995

EKY23984.1

0.994

EKY23988.1

0.980

EKY28600.1

0.979

EKY22049.1

0.976

EKY22046.1

0.969

EKY22378.1

0.959

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY22046.1	EKY22049.1	HMPREF0216_03376	HMPREF0216_03379	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	0.989
EKY22046.1	EKY22378.1	HMPREF0216_03376	HMPREF0216_03266	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	ABC transporter, substrate-binding protein, family 5; KEGG: tex:Teth514_0546 1.1e-13 4-phytase K02035; Psort location: Cellwall, score: 9.14.	0.900
EKY22046.1	EKY23984.1	HMPREF0216_03376	HMPREF0216_02743	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	Putative oligopeptide transport system permease protein OppB.	0.957
EKY22046.1	EKY23985.1	HMPREF0216_03376	HMPREF0216_02744	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	Oligopeptide ABC transporter, permease protein OppC.	0.969
EKY22046.1	EKY23986.1	HMPREF0216_03376	HMPREF0216_02745	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	Oligopeptide ABC transporter, ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.928
EKY22046.1	EKY23987.1	HMPREF0216_03376	HMPREF0216_02746	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	Oligopeptide ABC transporter, ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	0.938
EKY22046.1	EKY23988.1	HMPREF0216_03376	HMPREF0216_02747	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	Putative periplasmic oligopeptide-binding protein; KEGG: esi:Exig_2517 3.2e-84 4-phytase K02035; Psort location: Cellwall, score: 9.21.	0.894
EKY22046.1	EKY28597.1	HMPREF0216_03376	HMPREF0216_00650	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	KEGG: rcp:RCAP_rcc00707 2.6e-98 oppF; oligopeptide ABC transporter ATP-binding protein OppF K02032; Psort location: CytoplasmicMembrane, score: 9.96.	0.936
EKY22046.1	EKY28598.1	HMPREF0216_03376	HMPREF0216_00651	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	KEGG: llk:LLKF_0402 2.0e-91 optD; oligopeptide ABC transporter ATP-binding protein K02031; Psort location: CytoplasmicMembrane, score: 8.78.	0.929
EKY22046.1	EKY28600.1	HMPREF0216_03376	HMPREF0216_00653	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	Putative oligopeptide transporter permease; KEGG: lba:Lebu_2290 1.1e-58 alkaline phosphatase K02033; Psort location: CytoplasmicMembrane, score: 10.00.	0.953
EKY22049.1	EKY22046.1	HMPREF0216_03379	HMPREF0216_03376	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	0.989
EKY22049.1	EKY22378.1	HMPREF0216_03379	HMPREF0216_03266	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	ABC transporter, substrate-binding protein, family 5; KEGG: tex:Teth514_0546 1.1e-13 4-phytase K02035; Psort location: Cellwall, score: 9.14.	0.853
EKY22049.1	EKY23984.1	HMPREF0216_03379	HMPREF0216_02743	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	Putative oligopeptide transport system permease protein OppB.	0.900
EKY22049.1	EKY23985.1	HMPREF0216_03379	HMPREF0216_02744	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	Oligopeptide ABC transporter, permease protein OppC.	0.976
EKY22049.1	EKY23987.1	HMPREF0216_03379	HMPREF0216_02746	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	Oligopeptide ABC transporter, ATP-binding protein AppF; Belongs to the ABC transporter superfamily.	0.907
EKY22049.1	EKY23988.1	HMPREF0216_03379	HMPREF0216_02747	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	Putative periplasmic oligopeptide-binding protein; KEGG: esi:Exig_2517 3.2e-84 4-phytase K02035; Psort location: Cellwall, score: 9.21.	0.755
EKY22049.1	EKY28597.1	HMPREF0216_03379	HMPREF0216_00650	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	KEGG: rcp:RCAP_rcc00707 2.6e-98 oppF; oligopeptide ABC transporter ATP-binding protein OppF K02032; Psort location: CytoplasmicMembrane, score: 9.96.	0.832
EKY22049.1	EKY28600.1	HMPREF0216_03379	HMPREF0216_00653	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	Putative oligopeptide transporter permease; KEGG: lba:Lebu_2290 1.1e-58 alkaline phosphatase K02033; Psort location: CytoplasmicMembrane, score: 10.00.	0.901
EKY22378.1	EKY22046.1	HMPREF0216_03266	HMPREF0216_03376	ABC transporter, substrate-binding protein, family 5; KEGG: tex:Teth514_0546 1.1e-13 4-phytase K02035; Psort location: Cellwall, score: 9.14.	ABC transporter, substrate-binding protein, family 5; KEGG: efe:EFER_1783 6.4e-63 putative substrate-binding transport protein K02035; Psort location: Cellwall, score: 9.21.	0.900
EKY22378.1	EKY22049.1	HMPREF0216_03266	HMPREF0216_03379	ABC transporter, substrate-binding protein, family 5; KEGG: tex:Teth514_0546 1.1e-13 4-phytase K02035; Psort location: Cellwall, score: 9.14.	KEGG: ava:Ava_C0014 5.4e-82 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.96.	0.853