Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EKY23873.1 | EKY23874.1 | HMPREF0216_02886 | HMPREF0216_02887 | KEGG: btk:BT9727_3510 3.8e-81 mutS; DNA mismatch repair protein MutS K03555; Psort location: Cytoplasmic, score: 7.50. | MutS domain V protein; KEGG: bal:BACI_c37190 1.2e-114 mutS; DNA mismatch repair protein K03555; Psort location: Cytoplasmic, score: 7.50. | 0.986 |
| EKY23873.1 | hfq | HMPREF0216_02886 | HMPREF0216_02890 | KEGG: btk:BT9727_3510 3.8e-81 mutS; DNA mismatch repair protein MutS K03555; Psort location: Cytoplasmic, score: 7.50. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.435 |
| EKY23873.1 | miaA | HMPREF0216_02886 | HMPREF0216_02889 | KEGG: btk:BT9727_3510 3.8e-81 mutS; DNA mismatch repair protein MutS K03555; Psort location: Cytoplasmic, score: 7.50. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.630 |
| EKY23873.1 | mutL | HMPREF0216_02886 | HMPREF0216_02888 | KEGG: btk:BT9727_3510 3.8e-81 mutS; DNA mismatch repair protein MutS K03555; Psort location: Cytoplasmic, score: 7.50. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.995 |
| EKY23874.1 | EKY23873.1 | HMPREF0216_02887 | HMPREF0216_02886 | MutS domain V protein; KEGG: bal:BACI_c37190 1.2e-114 mutS; DNA mismatch repair protein K03555; Psort location: Cytoplasmic, score: 7.50. | KEGG: btk:BT9727_3510 3.8e-81 mutS; DNA mismatch repair protein MutS K03555; Psort location: Cytoplasmic, score: 7.50. | 0.986 |
| EKY23874.1 | hfq | HMPREF0216_02887 | HMPREF0216_02890 | MutS domain V protein; KEGG: bal:BACI_c37190 1.2e-114 mutS; DNA mismatch repair protein K03555; Psort location: Cytoplasmic, score: 7.50. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.718 |
| EKY23874.1 | miaA | HMPREF0216_02887 | HMPREF0216_02889 | MutS domain V protein; KEGG: bal:BACI_c37190 1.2e-114 mutS; DNA mismatch repair protein K03555; Psort location: Cytoplasmic, score: 7.50. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.836 |
| EKY23874.1 | mutL | HMPREF0216_02887 | HMPREF0216_02888 | MutS domain V protein; KEGG: bal:BACI_c37190 1.2e-114 mutS; DNA mismatch repair protein K03555; Psort location: Cytoplasmic, score: 7.50. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.998 |
| EKY24034.1 | EKY26675.1 | HMPREF0216_02793 | HMPREF0216_01860 | S1 RNA binding domain protein. | RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | 0.434 |
| EKY24034.1 | miaA | HMPREF0216_02793 | HMPREF0216_02889 | S1 RNA binding domain protein. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.633 |
| EKY24034.1 | miaB | HMPREF0216_02793 | HMPREF0216_02795 | S1 RNA binding domain protein. | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | 0.641 |
| EKY24034.1 | mutL | HMPREF0216_02793 | HMPREF0216_02888 | S1 RNA binding domain protein. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.455 |
| EKY24034.1 | pheT | HMPREF0216_02793 | HMPREF0216_02762 | S1 RNA binding domain protein. | phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.822 |
| EKY24034.1 | rplO | HMPREF0216_02793 | HMPREF0216_01170 | S1 RNA binding domain protein. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.892 |
| EKY26675.1 | EKY24034.1 | HMPREF0216_01860 | HMPREF0216_02793 | RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | S1 RNA binding domain protein. | 0.434 |
| EKY26675.1 | miaA | HMPREF0216_01860 | HMPREF0216_02889 | RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.636 |
| hflX | hfq | HMPREF0216_02218 | HMPREF0216_02890 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.475 |
| hflX | miaA | HMPREF0216_02218 | HMPREF0216_02889 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.670 |
| hflX | rplO | HMPREF0216_02218 | HMPREF0216_01170 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.914 |
| hfq | EKY23873.1 | HMPREF0216_02890 | HMPREF0216_02886 | RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | KEGG: btk:BT9727_3510 3.8e-81 mutS; DNA mismatch repair protein MutS K03555; Psort location: Cytoplasmic, score: 7.50. | 0.435 |
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