Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKY23250.1ABC transporter, permease protein; KEGG: apb:SAR116_1441 6.4e-23 probable taurine uptake ABC transporter permease protein K02050; Psort location: CytoplasmicMembrane, score: 10.00. (248 aa)    
Predicted Functional Partners:
EKY23252.1
NLPA lipoprotein; KEGG: apb:SAR116_1971 0.0044 ABC transporter, periplasmic substrate-binding protein K02051.
 
 0.992
EKY23251.1
ABC transporter, ATP-binding protein; KEGG: bmd:BMD_4703 1.4e-37 ssuB; aliphatic sulfonates ABC transporter ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.
 
 0.990
EKY26499.1
ABC transporter, ATP-binding protein; KEGG: cbt:CLH_2305 4.3e-41 aliphatic sulfonates import ATP-binding protein SsuB K02049; Psort location: CytoplasmicMembrane, score: 8.78.
 
 0.944
EKY26501.1
Hypothetical protein.
  
 0.938
EKY23254.1
KEGG: toc:Toce_1348 5.4e-82 4-hydroxybenzoate polyprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the UbiA prenyltransferase family.
     0.925
EKY26159.1
NMT1/THI5-like protein.
 
 0.907
EKY26160.1
ABC transporter, ATP-binding protein.
 
 0.898
EKY25756.1
[2Fe-2S]-binding domain protein.
    
 0.828
ubiX
Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
     0.822
EKY23255.1
Menaquinone biosynthesis decarboxylase, SCO4490 family; KEGG: toc:Toce_1349 7.3e-170 3-octaprenyl-4hydroxybenzoate decarboxylase K03182; Psort location: Cytoplasmic, score: 7.50; Belongs to the UbiD family.
 
     0.668
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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