Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EKY22725.1 | EKY22726.1 | HMPREF0216_03089 | HMPREF0216_03090 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | PAP2 family protein; KEGG: cbe:Cbei_0844 6.1e-90 diacylglycerol kinase; K00901 diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 10.00. | 0.627 |
| EKY22725.1 | era | HMPREF0216_03089 | HMPREF0216_03088 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.920 |
| EKY22725.1 | ybeY | HMPREF0216_03089 | HMPREF0216_03091 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.949 |
| EKY22726.1 | EKY22725.1 | HMPREF0216_03090 | HMPREF0216_03089 | PAP2 family protein; KEGG: cbe:Cbei_0844 6.1e-90 diacylglycerol kinase; K00901 diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 10.00. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.627 |
| EKY22726.1 | era | HMPREF0216_03090 | HMPREF0216_03088 | PAP2 family protein; KEGG: cbe:Cbei_0844 6.1e-90 diacylglycerol kinase; K00901 diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 10.00. | Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.785 |
| EKY22726.1 | ybeY | HMPREF0216_03090 | HMPREF0216_03091 | PAP2 family protein; KEGG: cbe:Cbei_0844 6.1e-90 diacylglycerol kinase; K00901 diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 10.00. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.981 |
| EKY25775.1 | rplK | HMPREF0216_02357 | HMPREF0216_01477 | Hypothetical protein. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.840 |
| EKY25775.1 | rplO | HMPREF0216_02357 | HMPREF0216_01170 | Hypothetical protein. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.927 |
| EKY25775.1 | rplQ | HMPREF0216_02357 | HMPREF0216_01184 | Hypothetical protein. | Ribosomal protein L17; KEGG: apb:SAR116_2416 1.4e-21 ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.97. | 0.884 |
| EKY25775.1 | rplU | HMPREF0216_02357 | HMPREF0216_03306 | Hypothetical protein. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.884 |
| EKY25775.1 | rplX | HMPREF0216_02357 | HMPREF0216_01162 | Hypothetical protein. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.924 |
| EKY25775.1 | rpsQ | HMPREF0216_02357 | HMPREF0216_01160 | Hypothetical protein. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.899 |
| EKY25775.1 | ybeY | HMPREF0216_02357 | HMPREF0216_03091 | Hypothetical protein. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.829 |
| era | EKY22725.1 | HMPREF0216_03088 | HMPREF0216_03089 | Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.920 |
| era | EKY22726.1 | HMPREF0216_03088 | HMPREF0216_03090 | Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | PAP2 family protein; KEGG: cbe:Cbei_0844 6.1e-90 diacylglycerol kinase; K00901 diacylglycerol kinase; Psort location: CytoplasmicMembrane, score: 10.00. | 0.785 |
| era | ybeY | HMPREF0216_03088 | HMPREF0216_03091 | Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.993 |
| rplK | EKY25775.1 | HMPREF0216_01477 | HMPREF0216_02357 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Hypothetical protein. | 0.840 |
| rplK | rplO | HMPREF0216_01477 | HMPREF0216_01170 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.997 |
| rplK | rplQ | HMPREF0216_01477 | HMPREF0216_01184 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L17; KEGG: apb:SAR116_2416 1.4e-21 ribosomal protein L17 K02879; Psort location: Cytoplasmic, score: 9.97. | 0.997 |
| rplK | rplU | HMPREF0216_01477 | HMPREF0216_03306 | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.996 |
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