EKY22770.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY22517.1	EKY22768.1	HMPREF0216_03240	HMPREF0216_03132	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	0.809
EKY22517.1	EKY22769.1	HMPREF0216_03240	HMPREF0216_03133	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	KEGG: bao:BAMF_1841 2.1e-71 spoVAD1; stage V sporulation protein AD.	0.827
EKY22517.1	EKY22770.1	HMPREF0216_03240	HMPREF0216_03134	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Stage V sporulation protein AC; Psort location: CytoplasmicMembrane, score: 10.00.	0.813
EKY22517.1	EKY22771.1	HMPREF0216_03240	HMPREF0216_03135	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.657
EKY22517.1	EKY22773.1	HMPREF0216_03240	HMPREF0216_03137	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	KEGG: npu:Npun_F4337 1.1e-05 anti-sigma-factor antagonist and sugar transfersase.	0.473
EKY22517.1	EKY26645.1	HMPREF0216_03240	HMPREF0216_01830	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.	0.767
EKY22517.1	EKY27008.1	HMPREF0216_03240	HMPREF0216_01611	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	SpoIVB peptidase; KEGG: cbk:CLL_A2396 2.2e-124 spoIVB; stage IV sporulation protein B K06399.	0.766
EKY22517.1	EKY27672.1	HMPREF0216_03240	HMPREF0216_01315	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Sporulation transcriptional regulator SpoIIID; Psort location: Cytoplasmic, score: 7.50.	0.745
EKY22517.1	gpr	HMPREF0216_03240	HMPREF0216_03117	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.770
EKY22517.1	spoIIAB	HMPREF0216_03240	HMPREF0216_03136	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.765
EKY22768.1	EKY22517.1	HMPREF0216_03132	HMPREF0216_03240	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.809
EKY22768.1	EKY22769.1	HMPREF0216_03132	HMPREF0216_03133	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: bao:BAMF_1841 2.1e-71 spoVAD1; stage V sporulation protein AD.	0.976
EKY22768.1	EKY22770.1	HMPREF0216_03132	HMPREF0216_03134	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	Stage V sporulation protein AC; Psort location: CytoplasmicMembrane, score: 10.00.	0.900
EKY22768.1	EKY22771.1	HMPREF0216_03132	HMPREF0216_03135	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	RNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.879
EKY22768.1	EKY22773.1	HMPREF0216_03132	HMPREF0216_03137	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: npu:Npun_F4337 1.1e-05 anti-sigma-factor antagonist and sugar transfersase.	0.823
EKY22768.1	EKY26645.1	HMPREF0216_03132	HMPREF0216_01830	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.	0.783
EKY22768.1	EKY27008.1	HMPREF0216_03132	HMPREF0216_01611	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	SpoIVB peptidase; KEGG: cbk:CLL_A2396 2.2e-124 spoIVB; stage IV sporulation protein B K06399.	0.808
EKY22768.1	EKY27672.1	HMPREF0216_03132	HMPREF0216_01315	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	Sporulation transcriptional regulator SpoIIID; Psort location: Cytoplasmic, score: 7.50.	0.773
EKY22768.1	gpr	HMPREF0216_03132	HMPREF0216_03117	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.781
EKY22768.1	spoIIAB	HMPREF0216_03132	HMPREF0216_03136	Stage V sporulation protein AE; Psort location: CytoplasmicMembrane, score: 10.00.	Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.898