EKY22788.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EKY22788.1

Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (153 aa)

Predicted Functional Partners:

EKY22789.1

0.641

EKY28078.1

0.639

EKY25087.1

0.545

EKY22790.1

0.541

EKY29053.1

0.536

EKY28079.1

0.536

EKY28082.1

0.512

EKY26560.1

0.512

EKY29653.1

0.440

EKY29654.1

0.440

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY22788.1	EKY22789.1	HMPREF0216_03153	HMPREF0216_03154	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Phage prohead protease, HK97 family; Psort location: Cytoplasmic, score: 7.50.	0.641
EKY22788.1	EKY22790.1	HMPREF0216_03153	HMPREF0216_03155	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: edi:EDI_048910 5.5e-06 intracellular protein transport protein USO1.	0.541
EKY22788.1	EKY25087.1	HMPREF0216_03153	HMPREF0216_02555	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein.	0.545
EKY22788.1	EKY26560.1	HMPREF0216_03153	HMPREF0216_01745	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Phage portal protein.	0.512
EKY22788.1	EKY28078.1	HMPREF0216_03153	HMPREF0216_00920	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Putative phage head-tail adaptor.	0.639
EKY22788.1	EKY28079.1	HMPREF0216_03153	HMPREF0216_00921	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Phage DNA packaging protein.	0.536
EKY22788.1	EKY28082.1	HMPREF0216_03153	HMPREF0216_00924	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Phage portal protein, HK97 family.	0.512
EKY22788.1	EKY29053.1	HMPREF0216_03153	HMPREF0216_00412	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	KEGG: chu:CHU_3450 0.00096 hypothetical protein K01238; Psort location: Cytoplasmic, score: 7.50.	0.536
EKY22788.1	EKY29653.1	HMPREF0216_03153	HMPREF0216_00061	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Glycosyl hydrolase, family 1; KEGG: bmq:BMQ_3354 4.1e-116 6-phospho-beta-glucosidase K01223; Psort location: Cytoplasmic, score: 9.97; Belongs to the glycosyl hydrolase 1 family.	0.440
EKY22788.1	EKY29654.1	HMPREF0216_03153	HMPREF0216_00062	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Glycosyl hydrolase, family 1; KEGG: bsu:BSU40110 2.6e-75 bglA; aryl-6-phospho-beta-glucosidase K01223; Psort location: Cytoplasmic, score: 9.97; Belongs to the glycosyl hydrolase 1 family.	0.440
EKY22789.1	EKY22788.1	HMPREF0216_03154	HMPREF0216_03153	Phage prohead protease, HK97 family; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.641
EKY22789.1	EKY22790.1	HMPREF0216_03154	HMPREF0216_03155	Phage prohead protease, HK97 family; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: edi:EDI_048910 5.5e-06 intracellular protein transport protein USO1.	0.773
EKY22790.1	EKY22788.1	HMPREF0216_03155	HMPREF0216_03153	Hypothetical protein; KEGG: edi:EDI_048910 5.5e-06 intracellular protein transport protein USO1.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.541
EKY22790.1	EKY22789.1	HMPREF0216_03155	HMPREF0216_03154	Hypothetical protein; KEGG: edi:EDI_048910 5.5e-06 intracellular protein transport protein USO1.	Phage prohead protease, HK97 family; Psort location: Cytoplasmic, score: 7.50.	0.773
EKY25087.1	EKY22788.1	HMPREF0216_02555	HMPREF0216_03153	Hypothetical protein.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.545
EKY25087.1	EKY26560.1	HMPREF0216_02555	HMPREF0216_01745	Hypothetical protein.	Phage portal protein.	0.602
EKY25087.1	EKY28078.1	HMPREF0216_02555	HMPREF0216_00920	Hypothetical protein.	Putative phage head-tail adaptor.	0.672
EKY25087.1	EKY28079.1	HMPREF0216_02555	HMPREF0216_00921	Hypothetical protein.	Phage DNA packaging protein.	0.611
EKY25087.1	EKY28082.1	HMPREF0216_02555	HMPREF0216_00924	Hypothetical protein.	Phage portal protein, HK97 family.	0.602
EKY25087.1	EKY29053.1	HMPREF0216_02555	HMPREF0216_00412	Hypothetical protein.	KEGG: chu:CHU_3450 0.00096 hypothetical protein K01238; Psort location: Cytoplasmic, score: 7.50.	0.611