Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKY22494.1EDD domain protein, DegV family; KEGG: mga:MGA_1184 3.4e-25 DegV-like protein; Psort location: Cytoplasmic, score: 7.50. (282 aa)    
Predicted Functional Partners:
EKY26623.1
DAK2 domain fusion protein YloV.
 
 0.981
EKY26624.1
Hypothetical protein.
 
    0.579
EKY22493.1
KEGG: cbt:CLH_0975 5.9e-163 hom; homoserine dehydrogenase K00003; Psort location: Cytoplasmic, score: 7.50.
       0.441
EKY27929.1
Transcriptional regulator, PadR family; Psort location: Cytoplasmic, score: 7.50.
  
    0.419
rex
Putative redox-sensing transcriptional repressor Rex; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state.
  
   
 0.408
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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