STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKY22508.1Pentapeptide repeat protein; KEGG: dsa:Desal_0704 2.2e-08 putative adenylate cyclase; Psort location: Cytoplasmic, score: 7.50. (214 aa)    
Predicted Functional Partners:
EKY29457.1
KEGG: cbe:Cbei_4324 0. DNA topoisomerase IV subunit B K02622; Psort location: Cytoplasmic, score: 9.67.
    
 
 0.660
gyrB
DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
    
 
 0.660
EKY23482.1
Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.604
EKY23295.1
Hypothetical protein; KEGG: eci:UTI89_C1627 1.4e-19 entS; EntS/YbdA MFS transporter.
  
 
 
 0.568
EKY23319.1
KEGG: ebr:ECB_01448 7.3e-25 yddV; predicted diguanylate cyclase; K13069 diguanylate cyclase; Psort location: CytoplasmicMembrane, score: 8.78.
 
  
 0.550
EKY27554.1
Glycosyl hydrolase family 25; KEGG: lfe:LAF_1820 1.3e-48 hypothetical protein; K01185 lysozyme; Psort location: Extracellular, score: 9.72.
   
 
 0.526
EKY28549.1
KEGG: cpr:CPR_2348 2.1e-39 spore-cortex-lytic enzyme, putative; K01449 N-acetylmuramoyl-L-alanine amidase; Psort location: CytoplasmicMembrane, score: 8.77.
    
 
 0.504
EKY27638.1
LysM domain protein; KEGG: fps:FP0019 0.00013 mltD; membrane-bound lytic murein transglycosylase D precursor K08307; Psort location: Cytoplasmic, score: 7.50.
    
 
 0.504
EKY22507.1
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: clj:CLJU_c01380 2.3e-113 speA; arginine decarboxylase; Psort location: Cytoplasmic, score: 9.97.
       0.503
EKY25535.1
Putative multidrug-efflux transporter 2 regulator.
 
    0.476
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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