Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EKY22339.1 | EKY29807.1 | HMPREF0216_03273 | HMPREF0216_00001 | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. | Carbon starvation protein CstA; Psort location: CytoplasmicMembrane, score: 10.00. | 0.976 |
EKY22339.1 | secA | HMPREF0216_03273 | HMPREF0216_03348 | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.454 |
EKY29807.1 | EKY22339.1 | HMPREF0216_00001 | HMPREF0216_03273 | Carbon starvation protein CstA; Psort location: CytoplasmicMembrane, score: 10.00. | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. | 0.976 |
EKY29807.1 | secA | HMPREF0216_00001 | HMPREF0216_03348 | Carbon starvation protein CstA; Psort location: CytoplasmicMembrane, score: 10.00. | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | 0.454 |
secA | EKY22339.1 | HMPREF0216_03348 | HMPREF0216_03273 | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00. | 0.454 |
secA | EKY29807.1 | HMPREF0216_03348 | HMPREF0216_00001 | Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family. | Carbon starvation protein CstA; Psort location: CytoplasmicMembrane, score: 10.00. | 0.454 |