STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfRibosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (175 aa)    
Predicted Functional Partners:
rpmC
Ribosomal protein L29; KEGG: apb:SAR116_2399 4.8e-10 ribosomal protein L29 K02904; Psort location: Cytoplasmic, score: 7.50; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.962
rpsU
Ribosomal protein S21; KEGG: sew:SeSA_A3399 6.0e-12 rpsU; 30S ribosomal protein S21 K02970; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.955
rpmA
Ribosomal protein L27; KEGG: apb:SAR116_1855 2.6e-18 ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.953
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
   0.952
rpsI
Ribosomal protein S9; KEGG: apb:SAR116_0492 3.7e-28 ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.952
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.948
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.948
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.948
rpsP
Ribosomal protein S16; KEGG: apb:SAR116_1817 3.0e-17 ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.948
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
    
 
 0.947
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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