EKY22057.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EKY22057.1

KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00. (577 aa)

Predicted Functional Partners:

EKY22056.1

0.899

EKY29561.1

0.569

EKY28752.1

0.554

EKY22058.1

0.505

EKY23482.1

0.421

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY22056.1	EKY22057.1	HMPREF0216_03386	HMPREF0216_03387	KEGG: bde:BDP_1652 5.8e-156 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 9.99.	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	0.899
EKY22056.1	EKY22058.1	HMPREF0216_03386	HMPREF0216_03388	KEGG: bde:BDP_1652 5.8e-156 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 9.99.	Transcriptional regulator, MarR family; Psort location: Cytoplasmic, score: 7.50.	0.514
EKY22056.1	EKY23482.1	HMPREF0216_03386	HMPREF0216_02918	KEGG: bde:BDP_1652 5.8e-156 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 9.99.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.421
EKY22057.1	EKY22056.1	HMPREF0216_03387	HMPREF0216_03386	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: bde:BDP_1652 5.8e-156 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 9.99.	0.899
EKY22057.1	EKY22058.1	HMPREF0216_03387	HMPREF0216_03388	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	Transcriptional regulator, MarR family; Psort location: Cytoplasmic, score: 7.50.	0.505
EKY22057.1	EKY23482.1	HMPREF0216_03387	HMPREF0216_02918	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.421
EKY22057.1	EKY28752.1	HMPREF0216_03387	HMPREF0216_00600	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: cbk:CLL_A2952 2.8e-227 lipid A export ATP-binding/permease protein MsbA; Psort location: CytoplasmicMembrane, score: 10.00.	0.554
EKY22057.1	EKY29561.1	HMPREF0216_03387	HMPREF0216_00144	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: lsp:Bsph_2454 1.8e-147 ABC transporter ATP-binding protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA; Psort location: CytoplasmicMembrane, score: 10.00.	0.569
EKY22058.1	EKY22056.1	HMPREF0216_03388	HMPREF0216_03386	Transcriptional regulator, MarR family; Psort location: Cytoplasmic, score: 7.50.	KEGG: bde:BDP_1652 5.8e-156 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 9.99.	0.514
EKY22058.1	EKY22057.1	HMPREF0216_03388	HMPREF0216_03387	Transcriptional regulator, MarR family; Psort location: Cytoplasmic, score: 7.50.	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	0.505
EKY23482.1	EKY22056.1	HMPREF0216_02918	HMPREF0216_03386	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	KEGG: bde:BDP_1652 5.8e-156 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 9.99.	0.421
EKY23482.1	EKY22057.1	HMPREF0216_02918	HMPREF0216_03387	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	0.421
EKY23482.1	EKY28752.1	HMPREF0216_02918	HMPREF0216_00600	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	KEGG: cbk:CLL_A2952 2.8e-227 lipid A export ATP-binding/permease protein MsbA; Psort location: CytoplasmicMembrane, score: 10.00.	0.421
EKY23482.1	EKY29561.1	HMPREF0216_02918	HMPREF0216_00144	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	KEGG: lsp:Bsph_2454 1.8e-147 ABC transporter ATP-binding protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA; Psort location: CytoplasmicMembrane, score: 10.00.	0.421
EKY28752.1	EKY22057.1	HMPREF0216_00600	HMPREF0216_03387	KEGG: cbk:CLL_A2952 2.8e-227 lipid A export ATP-binding/permease protein MsbA; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	0.554
EKY28752.1	EKY23482.1	HMPREF0216_00600	HMPREF0216_02918	KEGG: cbk:CLL_A2952 2.8e-227 lipid A export ATP-binding/permease protein MsbA; Psort location: CytoplasmicMembrane, score: 10.00.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.421
EKY29561.1	EKY22057.1	HMPREF0216_00144	HMPREF0216_03387	KEGG: lsp:Bsph_2454 1.8e-147 ABC transporter ATP-binding protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: bde:BDP_1654 5.9e-140 ATP-binding protein of ABC transporter system; Psort location: CytoplasmicMembrane, score: 10.00.	0.569
EKY29561.1	EKY23482.1	HMPREF0216_00144	HMPREF0216_02918	KEGG: lsp:Bsph_2454 1.8e-147 ABC transporter ATP-binding protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA; Psort location: CytoplasmicMembrane, score: 10.00.	Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.1e-10 TPR repeat-containing serine/threonin protein kinase K00908; Psort location: Cytoplasmic, score: 7.50.	0.421