STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
EKY22114.1Riboflavin kinase; KEGG: cbk:CLL_A1277 2.4e-40 ribF; bifunctional riboflavin kinase/FMN adenylyltransferase K11753. (140 aa)    
Predicted Functional Partners:
EKY22115.1
Putative riboflavin biosynthesis protein RibF; KEGG: cpf:CPF_1936 2.4e-47 ribF, ribC; bifunctional riboflavin kinase/FMN adenylyltransferase K11753.
     0.989
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
 
  
 0.898
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
 
  
 0.886
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
 
  
 0.846
EKY28434.1
Riboflavin synthase, alpha subunit.
    
 0.813
EKY26110.1
KEGG: cbk:CLL_A2853 3.0e-271 5-methyltetrahydrofolate--homocysteine methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase; Psort location: Cytoplasmic, score: 7.50.
     
 0.793
EKY22112.1
DHHA1 domain protein; KEGG: bsu:BSU29250 1.1e-26 nrnA; oligoribonuclease (nanoRNAse), 3',5'-bisphosphate nucleotidase K06881; Psort location: Cytoplasmic, score: 7.50.
       0.773
nusA
Transcription termination factor NusA; Participates in both transcription termination and antitermination.
 
    0.768
EKY22108.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
    0.753
EKY22109.1
Ribosomal protein L7Ae; Psort location: Cytoplasmic, score: 9.95.
       0.749
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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