EKY21952.1 protein (Clostridium celatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EKY21952.1

KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97. (310 aa)

Predicted Functional Partners:

EKY22755.1

0.978

EKY27305.1

0.976

EKY27729.1

0.957

EKY26284.1

0.927

dnaX

0.889

EKY21951.1

0.843

EKY21953.1

0.811

EKY29318.1

0.808

EKY24638.1

0.737

EKY24636.1

0.696

Your Current Organism:

Clostridium celatum

NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKY21951.1	EKY21952.1	HMPREF0216_03475	HMPREF0216_03476	PSP1 protein; KEGG: gka:GK0026 2.7e-87 signal peptidase II; Psort location: Cytoplasmic, score: 7.50.	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	0.843
EKY21951.1	EKY21953.1	HMPREF0216_03475	HMPREF0216_03477	PSP1 protein; KEGG: gka:GK0026 2.7e-87 signal peptidase II; Psort location: Cytoplasmic, score: 7.50.	KEGG: cnb:CNBB3750 0.0021 hypothetical protein; K12811 ATP-dependent RNA helicase DDX46/PRP5; Psort location: Cytoplasmic, score: 7.50.	0.814
EKY21952.1	EKY21951.1	HMPREF0216_03476	HMPREF0216_03475	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	PSP1 protein; KEGG: gka:GK0026 2.7e-87 signal peptidase II; Psort location: Cytoplasmic, score: 7.50.	0.843
EKY21952.1	EKY21953.1	HMPREF0216_03476	HMPREF0216_03477	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	KEGG: cnb:CNBB3750 0.0021 hypothetical protein; K12811 ATP-dependent RNA helicase DDX46/PRP5; Psort location: Cytoplasmic, score: 7.50.	0.811
EKY21952.1	EKY22755.1	HMPREF0216_03476	HMPREF0216_03119	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	KEGG: cbe:Cbei_0820 4.8e-113 holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 7.50.	0.978
EKY21952.1	EKY24636.1	HMPREF0216_03476	HMPREF0216_02666	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	Hypothetical protein.	0.696
EKY21952.1	EKY24638.1	HMPREF0216_03476	HMPREF0216_02668	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	Single-strand binding family protein.	0.737
EKY21952.1	EKY26284.1	HMPREF0216_03476	HMPREF0216_02066	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	Hypothetical protein; KEGG: mei:Msip34_1448 4.4e-07 DNA polymerase III, epsilon subunit K02342.	0.927
EKY21952.1	EKY27305.1	HMPREF0216_03476	HMPREF0216_01469	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.976
EKY21952.1	EKY27729.1	HMPREF0216_03476	HMPREF0216_01203	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	DNA polymerase III, alpha subunit; KEGG: cbe:Cbei_4853 0. dnaE; DNA polymerase III DnaE K02337; Psort location: Cytoplasmic, score: 9.97.	0.957
EKY21952.1	EKY29318.1	HMPREF0216_03476	HMPREF0216_00286	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	Hypothetical protein; KEGG: cbk:CLL_A3447 2.7e-39 dnaX; DNA polymerase III subunits gamma and tau K02343; Psort location: Cytoplasmic, score: 7.50.	0.808
EKY21952.1	dnaX	HMPREF0216_03476	HMPREF0216_00287	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.889
EKY21953.1	EKY21951.1	HMPREF0216_03477	HMPREF0216_03475	KEGG: cnb:CNBB3750 0.0021 hypothetical protein; K12811 ATP-dependent RNA helicase DDX46/PRP5; Psort location: Cytoplasmic, score: 7.50.	PSP1 protein; KEGG: gka:GK0026 2.7e-87 signal peptidase II; Psort location: Cytoplasmic, score: 7.50.	0.814
EKY21953.1	EKY21952.1	HMPREF0216_03477	HMPREF0216_03476	KEGG: cnb:CNBB3750 0.0021 hypothetical protein; K12811 ATP-dependent RNA helicase DDX46/PRP5; Psort location: Cytoplasmic, score: 7.50.	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	0.811
EKY22755.1	EKY21952.1	HMPREF0216_03119	HMPREF0216_03476	KEGG: cbe:Cbei_0820 4.8e-113 holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 7.50.	KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.	0.978
EKY22755.1	EKY26284.1	HMPREF0216_03119	HMPREF0216_02066	KEGG: cbe:Cbei_0820 4.8e-113 holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: mei:Msip34_1448 4.4e-07 DNA polymerase III, epsilon subunit K02342.	0.945
EKY22755.1	EKY27305.1	HMPREF0216_03119	HMPREF0216_01469	KEGG: cbe:Cbei_0820 4.8e-113 holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 7.50.	DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.989
EKY22755.1	EKY27729.1	HMPREF0216_03119	HMPREF0216_01203	KEGG: cbe:Cbei_0820 4.8e-113 holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 7.50.	DNA polymerase III, alpha subunit; KEGG: cbe:Cbei_4853 0. dnaE; DNA polymerase III DnaE K02337; Psort location: Cytoplasmic, score: 9.97.	0.980
EKY22755.1	EKY29318.1	HMPREF0216_03119	HMPREF0216_00286	KEGG: cbe:Cbei_0820 4.8e-113 holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: cbk:CLL_A3447 2.7e-39 dnaX; DNA polymerase III subunits gamma and tau K02343; Psort location: Cytoplasmic, score: 7.50.	0.956
EKY22755.1	dnaX	HMPREF0216_03119	HMPREF0216_00287	KEGG: cbe:Cbei_0820 4.8e-113 holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta; Psort location: Cytoplasmic, score: 7.50.	DNA polymerase III, subunit gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.975