Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EKY21953.1KEGG: cnb:CNBB3750 0.0021 hypothetical protein; K12811 ATP-dependent RNA helicase DDX46/PRP5; Psort location: Cytoplasmic, score: 7.50. (111 aa)    
Predicted Functional Partners:
EKY21951.1
PSP1 protein; KEGG: gka:GK0026 2.7e-87 signal peptidase II; Psort location: Cytoplasmic, score: 7.50.
  
    0.814
EKY21952.1
KEGG: cbk:CLL_A0200 4.9e-88 DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta'; Psort location: Cytoplasmic, score: 9.97.
  
    0.811
EKY21950.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.593
EKY21954.1
Hypothetical protein; KEGG: cpy:Cphy_3915 6.2e-49 guanylate kinase/L-type calcium channel region; K00942 guanylate kinase; Psort location: Cytoplasmic, score: 7.50.
       0.527
EKY26227.1
Hypothetical protein.
  
     0.446
EKY21956.1
Amidohydrolase; KEGG: ctc:CTC00218 6.6e-93 amidohydrolase K01463; Psort location: Cytoplasmic, score: 7.50; Belongs to the peptidase M20A family.
       0.442
EKY22203.1
LytS/YhcK-type transmembrane receptor domain protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
  
     0.437
Your Current Organism:
Clostridium celatum
NCBI taxonomy Id: 545697
Other names: C. celatum DSM 1785, Clostridium celatum DSM 1785
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