Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EFC88255.1 | msbA | NEIMUCOT_05201 | NEIMUCOT_03876 | ABC transporter, ATP-binding protein; KEGG: ilo:IL1061 5.7e-28 fbpC; ABC-type Fe3+ transport system, ATPase component K02010; Psort location: Cytoplasmic, score: 9.12. | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.673 |
| EFC88498.1 | msbA | NEIMUCOT_05170 | NEIMUCOT_03876 | Hypothetical protein. | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.532 |
| EFC88498.1 | msrB | NEIMUCOT_05170 | NEIMUCOT_04420 | Hypothetical protein. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.456 |
| EFC88831.1 | fabG | NEIMUCOT_04880 | NEIMUCOT_03871 | ABC transporter, ATP-binding protein; KEGG: rru:Rru_A1792 1.1e-91 ABC transporter component K01990; Psort location: CytoplasmicMembrane, score: 10.00. | 3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.439 |
| EFC88831.1 | msbA | NEIMUCOT_04880 | NEIMUCOT_03876 | ABC transporter, ATP-binding protein; KEGG: rru:Rru_A1792 1.1e-91 ABC transporter component K01990; Psort location: CytoplasmicMembrane, score: 10.00. | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.685 |
| EFC88831.1 | msrB | NEIMUCOT_04880 | NEIMUCOT_04420 | ABC transporter, ATP-binding protein; KEGG: rru:Rru_A1792 1.1e-91 ABC transporter component K01990; Psort location: CytoplasmicMembrane, score: 10.00. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.583 |
| EFC89458.1 | msbA | NEIMUCOT_03874 | NEIMUCOT_03876 | Glycosyltransferase, group 2 family protein; KEGG: gox:GOX1125 1.9e-146 glycosyltransferase K00754. | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.556 |
| EFC89458.1 | msrB | NEIMUCOT_03874 | NEIMUCOT_04420 | Glycosyltransferase, group 2 family protein; KEGG: gox:GOX1125 1.9e-146 glycosyltransferase K00754. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.424 |
| EFC89729.1 | msbA | NEIMUCOT_03528 | NEIMUCOT_03876 | Type I secretion system ATPase; KEGG: reh:H16_B0690 2.5e-128 rtxB2; ABC-type RTX toxin transporter, ATPase and permease components: Prot1E family; Psort location: CytoplasmicMembrane, score: 10.00. | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.557 |
| EFC89729.1 | msrB | NEIMUCOT_03528 | NEIMUCOT_04420 | Type I secretion system ATPase; KEGG: reh:H16_B0690 2.5e-128 rtxB2; ABC-type RTX toxin transporter, ATPase and permease components: Prot1E family; Psort location: CytoplasmicMembrane, score: 10.00. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.456 |
| EFC89816.1 | msbA | NEIMUCOT_03615 | NEIMUCOT_03876 | Histone deacetylase family; KEGG: bme:BMEI1504 1.7e-65 acetylspermidine deacetylase. | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.519 |
| EFC90012.1 | msbA | NEIMUCOT_03815 | NEIMUCOT_03876 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.532 |
| EFC90012.1 | msrB | NEIMUCOT_03815 | NEIMUCOT_04420 | Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.456 |
| dnaK | msbA | NEIMUCOT_06369 | NEIMUCOT_03876 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.588 |
| dnaK | msrB | NEIMUCOT_06369 | NEIMUCOT_04420 | Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.808 |
| fabG | EFC88831.1 | NEIMUCOT_03871 | NEIMUCOT_04880 | 3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | ABC transporter, ATP-binding protein; KEGG: rru:Rru_A1792 1.1e-91 ABC transporter component K01990; Psort location: CytoplasmicMembrane, score: 10.00. | 0.439 |
| fabG | msbA | NEIMUCOT_03871 | NEIMUCOT_03876 | 3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | 0.531 |
| fabG | msrB | NEIMUCOT_03871 | NEIMUCOT_04420 | 3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.613 |
| msbA | EFC88255.1 | NEIMUCOT_03876 | NEIMUCOT_05201 | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | ABC transporter, ATP-binding protein; KEGG: ilo:IL1061 5.7e-28 fbpC; ABC-type Fe3+ transport system, ATPase component K02010; Psort location: Cytoplasmic, score: 9.12. | 0.673 |
| msbA | EFC88498.1 | NEIMUCOT_03876 | NEIMUCOT_05170 | Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. | Hypothetical protein. | 0.532 |
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