STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC87250.1ATPase, AFG1 family; KEGG: reh:H16_A2322 4.1e-87 ATPase K01529; Psort location: Cytoplasmic, score: 8.96. (378 aa)    
Predicted Functional Partners:
sdhB
KEGG: ngo:NGO0920 1.0e-131 putative succinate dehydrogenase K00240; Psort location: Cytoplasmic, score: 8.96; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
    0.733
sdhA
KEGG: nma:NMA1145 0. sdhA; succinate dehydrogenase flavoprotein subunit K00239; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
 
    0.714
sdhC
KEGG: nme:NMB0948 4.7e-54 succinate dehydrogenase cytochrome b-556 subunit K00241; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.640
EFC87251.1
Hypothetical protein.
       0.636
ihfB
Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.587
rpsA
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
       0.575
EFC87254.1
Hypothetical protein.
       0.573
cmk
Cytidylate kinase; KEGG: ngo:NGO0605 1.6e-85 putative cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.96.
       0.523
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
    0.511
sdhD
KEGG: nma:NMA1144 1.7e-56 sdhD; succinate dehydrogenase hydrophobic membrane anchor protein K00242; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.450
Your Current Organism:
Neisseria mucosa
NCBI taxonomy Id: 546266
Other names: N. mucosa ATCC 25996, Neisseria mucosa ATCC 25996, Neisseria mucosa str. ATCC 25996, Neisseria mucosa strain ATCC 25996
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