STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC87140.1GIY-YIG catalytic domain protein. (92 aa)    
Predicted Functional Partners:
EFC87139.1
LysR substrate binding domain protein; Psort location: Cytoplasmic, score: 8.96; Belongs to the LysR transcriptional regulatory family.
       0.773
EFC87141.1
Hypothetical protein.
       0.773
EFC87142.1
Hypothetical protein.
       0.773
EFC87138.1
NAD dependent epimerase/dehydratase family protein; KEGG: reh:H16_A2352 5.8e-33 putative NADH-flavin reductase K05901.
 
     0.618
Your Current Organism:
Neisseria mucosa
NCBI taxonomy Id: 546266
Other names: N. mucosa ATCC 25996, Neisseria mucosa ATCC 25996, Neisseria mucosa str. ATCC 25996, Neisseria mucosa strain ATCC 25996
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