STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFH24166.1RNA polymerase Rpb1, domain 5; KEGG: nmc:NMC0124 0. rpoC; DNA-directed RNA polymerase subunit beta' K03046; Psort location: Cytoplasmic, score: 9.97. (737 aa)    
Predicted Functional Partners:
rpoB
KEGG: nmn:NMCC_2013 7.1e-158 rpoB; DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta; Psort location: Cytoplasmic, score: 8.96.
 0.998
rpoB-2
KEGG: nmi:NMO_1906 0. rpoB; DNA-directed RNA polymerase beta chain K03043; Psort location: Cytoplasmic, score: 9.97.
 0.998
rpoA
KEGG: nme:NMB0168 1.2e-141 rpoA; DNA-directed RNA polymerase subunit alpha K03040; Psort location: Cytoplasmic, score: 9.97.
 
 0.987
EFH21618.1
RNA polymerase Rpb1, domain 1; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
     0.976
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 0.939
rpsB
Ribosomal protein S2; Psort location: Cytoplasmic, score: 9.97; Belongs to the universal ribosomal protein uS2 family.
 
 0.937
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
 
 
 0.932
nusA
Transcription termination factor NusA, C-terminal duplication; Psort location: Cytoplasmic, score: 8.96.
  
  0.883
rpsL
Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
 
 
 0.879
nusG
Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.
 
 0.872
Your Current Organism:
Neisseria polysaccharea ATCC 43768
NCBI taxonomy Id: 546267
Other names: N. polysaccharea ATCC 43768, Neisseria polysaccharea str. ATCC 43768, Neisseria polysaccharea strain ATCC 43768
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.