EFH22368.1 protein (Neisseria polysaccharea ATCC 43768)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFH22368.1

Phage-related baseplate assembly protein. (211 aa)

Predicted Functional Partners:

EFH22369.1

0.992

EFH22366.1

0.986

EFH22365.1

0.984

EFH22378.1

0.977

EFH22377.1

0.966

EFH22367.1

0.963

EFH23722.1

0.844

EFH22371.1

0.807

EFH22376.1

0.794

EFH22372.1

0.792

Your Current Organism:

Neisseria polysaccharea ATCC 43768

NCBI taxonomy Id: 546267
Other names: N. polysaccharea ATCC 43768, Neisseria polysaccharea str. ATCC 43768, Neisseria polysaccharea strain ATCC 43768

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFH22365.1	EFH22366.1	NEIPOLOT_01873	NEIPOLOT_01874	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	0.996
EFH22365.1	EFH22367.1	NEIPOLOT_01873	NEIPOLOT_01875	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Putative lysozyme.	0.988
EFH22365.1	EFH22368.1	NEIPOLOT_01873	NEIPOLOT_01876	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage-related baseplate assembly protein.	0.984
EFH22365.1	EFH22369.1	NEIPOLOT_01873	NEIPOLOT_01878	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage late control gene D protein (GPD).	0.985
EFH22365.1	EFH22371.1	NEIPOLOT_01873	NEIPOLOT_01879	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; KEGG: rha:RHA1_ro07135 0.0022 alaS; alanyl-tRNA synthetase K01872.	0.937
EFH22365.1	EFH22372.1	NEIPOLOT_01873	NEIPOLOT_01880	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage tail tape measure protein, TP901 family; KEGG: bcy:Bcer98_0564 0.0073 monosaccharide-transporting ATPase K10439; Psort location: CytoplasmicMembrane, score: 10.00.	0.729
EFH22365.1	EFH22376.1	NEIPOLOT_01873	NEIPOLOT_01884	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.808
EFH22365.1	EFH22377.1	NEIPOLOT_01873	NEIPOLOT_01885	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage major tail tube protein.	0.981
EFH22365.1	EFH22378.1	NEIPOLOT_01873	NEIPOLOT_01886	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage tail sheath protein; Psort location: Cytoplasmic, score: 8.96.	0.987
EFH22365.1	EFH23722.1	NEIPOLOT_01873	NEIPOLOT_00466	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.855
EFH22366.1	EFH22365.1	NEIPOLOT_01874	NEIPOLOT_01873	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage tail protein I-like protein; Psort location: Cytoplasmic, score: 8.96.	0.996
EFH22366.1	EFH22367.1	NEIPOLOT_01874	NEIPOLOT_01875	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Putative lysozyme.	0.984
EFH22366.1	EFH22368.1	NEIPOLOT_01874	NEIPOLOT_01876	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage-related baseplate assembly protein.	0.986
EFH22366.1	EFH22369.1	NEIPOLOT_01874	NEIPOLOT_01878	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage late control gene D protein (GPD).	0.989
EFH22366.1	EFH22371.1	NEIPOLOT_01874	NEIPOLOT_01879	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; KEGG: rha:RHA1_ro07135 0.0022 alaS; alanyl-tRNA synthetase K01872.	0.937
EFH22366.1	EFH22372.1	NEIPOLOT_01874	NEIPOLOT_01880	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage tail tape measure protein, TP901 family; KEGG: bcy:Bcer98_0564 0.0073 monosaccharide-transporting ATPase K10439; Psort location: CytoplasmicMembrane, score: 10.00.	0.793
EFH22366.1	EFH22376.1	NEIPOLOT_01874	NEIPOLOT_01884	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.808
EFH22366.1	EFH22377.1	NEIPOLOT_01874	NEIPOLOT_01885	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage major tail tube protein.	0.983
EFH22366.1	EFH22378.1	NEIPOLOT_01874	NEIPOLOT_01886	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Phage tail sheath protein; Psort location: Cytoplasmic, score: 8.96.	0.983
EFH22366.1	EFH23722.1	NEIPOLOT_01874	NEIPOLOT_00466	Baseplate J-like protein; Psort location: Cytoplasmic, score: 8.96.	Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.	0.780