Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFE27666.1 | EFE27859.2 | HMPREF0389_01585 | HMPREF0389_01491 | DnaD domain protein. | Hypothetical protein. | 0.703 |
EFE27666.1 | EFE28448.1 | HMPREF0389_01585 | HMPREF0389_00363 | DnaD domain protein. | Tetratricopeptide repeat protein. | 0.735 |
EFE27666.1 | EFE28473.1 | HMPREF0389_01585 | HMPREF0389_00388 | DnaD domain protein. | Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. | 0.527 |
EFE27666.1 | nadK | HMPREF0389_01585 | HMPREF0389_00033 | DnaD domain protein. | NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.584 |
EFE27859.2 | EFE27666.1 | HMPREF0389_01491 | HMPREF0389_01585 | Hypothetical protein. | DnaD domain protein. | 0.703 |
EFE27859.2 | EFE28448.1 | HMPREF0389_01491 | HMPREF0389_00363 | Hypothetical protein. | Tetratricopeptide repeat protein. | 0.713 |
EFE27859.2 | EFE28473.1 | HMPREF0389_01491 | HMPREF0389_00388 | Hypothetical protein. | Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. | 0.644 |
EFE27859.2 | nadK | HMPREF0389_01491 | HMPREF0389_00033 | Hypothetical protein. | NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.526 |
EFE28121.1 | nadK | HMPREF0389_00034 | HMPREF0389_00033 | Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.610 |
EFE28448.1 | EFE27666.1 | HMPREF0389_00363 | HMPREF0389_01585 | Tetratricopeptide repeat protein. | DnaD domain protein. | 0.735 |
EFE28448.1 | EFE27859.2 | HMPREF0389_00363 | HMPREF0389_01491 | Tetratricopeptide repeat protein. | Hypothetical protein. | 0.713 |
EFE28448.1 | EFE28473.1 | HMPREF0389_00363 | HMPREF0389_00388 | Tetratricopeptide repeat protein. | Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. | 0.661 |
EFE28448.1 | nadK | HMPREF0389_00363 | HMPREF0389_00033 | Tetratricopeptide repeat protein. | NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.524 |
EFE28473.1 | EFE27666.1 | HMPREF0389_00388 | HMPREF0389_01585 | Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. | DnaD domain protein. | 0.527 |
EFE28473.1 | EFE27859.2 | HMPREF0389_00388 | HMPREF0389_01491 | Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. | Hypothetical protein. | 0.644 |
EFE28473.1 | EFE28448.1 | HMPREF0389_00388 | HMPREF0389_00363 | Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. | Tetratricopeptide repeat protein. | 0.661 |
EFE28473.1 | nadK | HMPREF0389_00388 | HMPREF0389_00033 | Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. | NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.496 |
EFE29145.1 | nadK | HMPREF0389_01067 | HMPREF0389_00033 | Hypothetical protein; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA. | NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.472 |
cobB | nadD | HMPREF0389_00502 | HMPREF0389_00342 | Transcriptional regulator, Sir2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). | 0.929 |
cobB | nadE | HMPREF0389_00502 | HMPREF0389_00941 | Transcriptional regulator, Sir2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. | NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family. | 0.914 |
page 1 of 2