STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE28511.1Type II/IV secretion system protein. (556 aa)    
Predicted Functional Partners:
EFE28506.2
Bacterial type II secretion system domain protein F.
 
 0.928
EFE28402.1
Bacterial type II secretion system domain protein F.
 
 
 0.915
EFE28495.2
Bacterial peptidase A24, N-terminal domain protein.
 
 
 0.855
EFE28501.1
Type IV pilus assembly protein PilM.
 
 
 0.812
EFE28500.2
Fimbrial assembly protein PilN.
  
 
 0.778
EFE28499.2
Hypothetical protein.
  
 
 0.694
EFE28510.2
Twitching motility protein.
 
  
0.647
nifJ
Pyruvate synthase.
   
   0.491
EFE28003.1
comEA protein.
  
  
 0.479
EFE27985.1
Single-strand binding family protein.
  
  
 0.456
Your Current Organism:
Filifactor alocis
NCBI taxonomy Id: 546269
Other names: F. alocis ATCC 35896, Filifactor alocis ATCC 35896, Filifactor alocis str. ATCC 35896, Filifactor alocis strain ATCC 35896
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.