STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hgdC(R)-2-hydroxyglutaryl-CoA dehydratase activator. (269 aa)    
Predicted Functional Partners:
hgdB
2-hydroxyglutaryl-CoA dehydratase D-component.
 
 0.999
fldB
R-phenyllactate dehydratase, medium subunit.
 
 
 0.979
gcdA
glutaconyl-CoA decarboxylase subunit alpha.
 
 
  0.779
gctB
Glutaconate CoA-transferase subunit B.
 
  
  0.715
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
 
      0.556
gctA
Glutaconate CoA-transferase subunit A.
 
     0.447
EFE27941.1
Putative CoA-substrate-specific enzyme activase.
 
   
0.411
Your Current Organism:
Filifactor alocis
NCBI taxonomy Id: 546269
Other names: F. alocis ATCC 35896, Filifactor alocis ATCC 35896, Filifactor alocis str. ATCC 35896, Filifactor alocis strain ATCC 35896
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