STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE87892.1Hypothetical protein; KEGG: ddi:DDB_0238072 0.00075 dus3l; CCCH-type Zn finger-containing protein; K05544 tRNA-dihydrouridine synthase 3; Psort location: OuterMembrane, score: 9.49. (438 aa)    
Predicted Functional Partners:
EFE87891.1
Hypothetical protein.
       0.732
lysS
lysine--tRNA ligase; KEGG: fnu:FN0466 5.2e-255 lysyl-tRNA synthetase K04567; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.703
EFE87894.1
LrgA family protein; KEGG: btk:BT9727_3424 2.7e-13 holin-like protein K06518; Psort location: CytoplasmicMembrane, score: 9.46.
       0.518
EFE87895.1
Putative TIGR00659 family protein; KEGG: btl:BALH_3309 3.1e-35 murein hydrolase export regulator K01238; Psort location: CytoplasmicMembrane, score: 10.00.
       0.518
cutC
CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family.
       0.511
rlmH
Putative rRNA large subunit m3Psi methyltransferase RlmH; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family.
       0.425
mutL
DNA mismatch repair domain protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
       0.421
Your Current Organism:
Fusobacterium periodonticum
NCBI taxonomy Id: 546275
Other names: F. periodonticum ATCC 33693, Fusobacterium periodonticum ATCC 33693, Fusobacterium periodonticum str. ATCC 33693, Fusobacterium periodonticum strain ATCC 33693
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.