STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recXRegulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. (191 aa)    
Predicted Functional Partners:
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.928
EFE87418.1
KEGG: bba:Bd0691 2.6e-20 hypothetical protein K01043.
 
     0.878
EFE87415.1
KEGG: sul:SYO3AOP1_0389 2.6e-38 glycosyl transferase family 9; K02843 heptosyltransferase II.
 
     0.805
EFE87417.1
Heptosyltransferase; KEGG: fnu:FN0544 6.7e-168 ADP-heptose:LPS heptosyltransferase II; K02843 heptosyltransferase II; Psort location: Cytoplasmic, score: 8.96.
 
     0.804
tsaD
Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
     0.802
EFE87419.1
Glycosyltransferase, group 2 family protein; KEGG: bav:BAV2236 6.2e-46 waaE; lipopolysaccharide core biosynthesis glycosyl transferase; Psort location: OuterMembrane, score: 9.49.
 
     0.802
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
 
  
 0.796
EFE87420.1
KEGG: chu:CHU_0603 3.4e-61 polysaccharide deacetylase K01452.
 
   
 0.795
EFE87416.1
Hypothetical protein; KEGG: fnu:FN1240 5.7e-20 lipopolysaccharide core biosynthesis protein RfaY; K02850 lipopolysaccharide core biosynthesis protein RFAY.
       0.778
EFE86894.1
Putative phage tail component domain protein; KEGG: tva:TVAG_387410 1.7e-23 viral A-type inclusion protein; K02331 DNA polymerase phi subunit; Psort location: OuterMembrane, score: 9.49.
 
     0.767
Your Current Organism:
Fusobacterium periodonticum
NCBI taxonomy Id: 546275
Other names: F. periodonticum ATCC 33693, Fusobacterium periodonticum ATCC 33693, Fusobacterium periodonticum str. ATCC 33693, Fusobacterium periodonticum strain ATCC 33693
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.