STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE87238.1Hypothetical protein. (247 aa)    
Predicted Functional Partners:
EFE87239.1
Hypothetical protein.
 
    
0.698
EFE87237.1
Hypothetical protein; KEGG: pfa:PFF0100w 0.00046 ATP dependent RNA helicase K01529.
      
0.576
recJ-2
KEGG: fnu:FN0374 0. single-stranded-DNA-specific exonuclease RecJ K07462; Psort location: Cytoplasmic, score: 8.96.
       0.474
EFE87236.1
Hypothetical protein; KEGG: pyo:PY04754 0.0017 S-adenosylmethionine decarboxylase-ornithine decarboxylase-related; K01581 ornithine decarboxylase K01611.
 
    
0.448
Your Current Organism:
Fusobacterium periodonticum
NCBI taxonomy Id: 546275
Other names: F. periodonticum ATCC 33693, Fusobacterium periodonticum ATCC 33693, Fusobacterium periodonticum str. ATCC 33693, Fusobacterium periodonticum strain ATCC 33693
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.