STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE87012.1Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 9.46. (262 aa)    
Predicted Functional Partners:
ecfA
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.998
ecfA-2
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 0.997
EFE87166.1
Hypothetical protein; KEGG: sgo:SGO_1070 0.00020 bioY-2; biotin synthase K03523.
 
 0.952
EFE87009.1
BioY family protein; KEGG: lsp:Bsph_2383 2.2e-11 biotin synthase K03523; Psort location: CytoplasmicMembrane, score: 9.46.
 
 
 0.943
EFE86723.1
KEGG: reh:H16_B0716 7.9e-62 dppF3; ABC-type transporter, ATPase component: PepT family K02032; Psort location: Cytoplasmic, score: 9.12.
  
 
 0.829
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.545
EFE86072.1
DNA polymerase III, alpha subunit; KEGG: cth:Cthe_0996 5.1e-48 DNA polymerase III PolC K03763; Psort location: Cytoplasmic, score: 8.96.
  
     0.520
EFE87008.1
Hypothetical protein; KEGG: hpa:HPAG1_0201 2.2e-06 putative transposase OrfB K07496.
       0.519
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
     0.517
CbiG
CbiG; KEGG: scl:sce0235 6.2e-30 cbiG; uroporphyrin-III C-methyltransferase K02189.
  
  
 0.481
Your Current Organism:
Fusobacterium periodonticum
NCBI taxonomy Id: 546275
Other names: F. periodonticum ATCC 33693, Fusobacterium periodonticum ATCC 33693, Fusobacterium periodonticum str. ATCC 33693, Fusobacterium periodonticum strain ATCC 33693
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.