STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE86816.1Putative transposase DNA-binding domain protein; KEGG: trq:TRQ2_1629 2.3e-14 IS605 family transposase OrfB; Psort location: Cytoplasmic, score: 8.96. (52 aa)    
Predicted Functional Partners:
EFE86815.1
KEGG: cch:Cag_0626 3.2e-42 recombination factor protein RarA K07478.
       0.486
EFE87991.1
KEGG: esi:Exig_2794 1.8e-41 IS605 family transposase OrfB.
  
     0.483
hisS
histidine--tRNA ligase; KEGG: fnu:FN0298 4.7e-199 histidyl-tRNA synthetase K01892; Psort location: Cytoplasmic, score: 9.97.
       0.479
aspS
aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.457
Your Current Organism:
Fusobacterium periodonticum
NCBI taxonomy Id: 546275
Other names: F. periodonticum ATCC 33693, Fusobacterium periodonticum ATCC 33693, Fusobacterium periodonticum str. ATCC 33693, Fusobacterium periodonticum strain ATCC 33693
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