STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW53183.1PH domain-containing protein. (139 aa)    
Predicted Functional Partners:
crgA
Uncharacterised protein family (UPF0233); Involved in cell division; Belongs to the CrgA family.
 
   
 0.761
SFW72813.1
Hypothetical protein.
  
     0.640
SFW51846.1
Protein of unknown function.
  
   
 0.639
SFW64404.1
DivIVA domain-containing protein.
  
     0.617
SFW82746.1
Hypothetical protein.
  
     0.598
SFW76692.1
Hypothetical protein.
  
     0.576
SFW45856.1
Protein of unknown function.
  
     0.570
SFW49264.1
Hypothetical protein.
  
     0.559
SFW72818.1
TLP18.3, Psb32 and MOLO-1 founding protein of phosphatase.
  
     0.545
SFW65185.1
Hypothetical protein.
  
     0.539
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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