STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFW53631.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
SFW53621.1
Signal transduction histidine kinase.
 
     0.779
SFW58864.1
Cupin domain-containing protein.
  
     0.630
SFW85032.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase D.
 
 
 0.609
SFW69668.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
     
 0.608
SFW69132.1
KR domain-containing protein.
 
 
 0.604
SFW89389.1
Hypothetical protein.
  
     0.598
SFW88511.1
Acyl transferase domain-containing protein.
 
 
 0.594
SFW75705.1
Acyl transferase domain-containing protein.
 
 
 0.590
SFW75659.1
Acyl transferase domain-containing protein.
 
 
 0.588
SFW76140.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.585
Your Current Organism:
Amycolatopsis australiensis
NCBI taxonomy Id: 546364
Other names: A. australiensis, Amycolatopsis australiensis Tan et al. 2006, Amycolatopsis sp. GY048, Amycolatopsis sp. GY049, Amycolatopsis sp. GY056, Amycolatopsis sp. GY064, Amycolatopsis sp. GY269, Amycolatopsis sp. GY276, Amycolatopsis sp. GY286, DSM 44671, JCM 15587, NCIMB 14142, strain GY048
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